Mustela nigripes (black-footed ferret): 132001973
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Entry
132001973 CDS
T09425
Symbol
COL16A1
Name
(RefSeq) collagen alpha-1(XVI) chain isoform X1
KO
K24339
collagen type XVI alpha
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
132001973 (COL16A1)
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GFIT
Motif
Pfam:
Collagen
Laminin_G_2
zf-C2H2_5
Motif
Other DBs
NCBI-GeneID:
132001973
NCBI-ProteinID:
XP_059232962
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Position
14:complement(23419431..23469472)
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AA seq
1625 aa
AA seq
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MRAPWVPGLWLLSLWAVCSRGADTGEQCPPSQQEGLKLEPRSHLSTNVTGFNLIRRLNLM
KTSAIKKIRNPKGPLILRLGAAALTQPVRRVFPRGLPDEFALVLTLLLKKHTHQSTWYLF
QVTDGDGYPQISLEVNSPERSLELRARGQDGDFVSCIFRVPQLFDLRWHKLVLSMSERVA
SVHVDCISASSKPLGPRQPMRPVGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCC
EILPGGCPPETSKARRDTQSNELIEINPQTEGRVYTRCFCLEEPQNSKVDAQRTGSISQQ
AERGTKARQETAADECPPCVHGARGSNVTVGPSGPKGGKGERGLPGPSGPKGEKGARGND
CVRISPDAPLQCAEGPKGEKGESGALGPSGLPGSTGQKGQKGEKGDGGIKGSPGKPGRDG
RPGEICVMGPKGQKGDPGFVGPEGLAGEPGRPGLPGPPGIGLPGTPGDPGGPAGPKGDKG
SSGVPGKEGPGGKPGKPGVPGLKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPA
PAKEGLGAVGWKGDRGDPGIQGPKGEKGDSCLSCSLAVGSQHLGPSTGAKGDTGAPGFGL
PGLPGKVGAPGPAGLKGEKGNFGETGPAGRQGPPGPVGATGIKGEKGEPCEPCPALSRPQ
DGDSYTVALPGPPGEKGETGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGVPGTTGQP
GLSGEPGVRGPMGPKGEKGDGCTACPSLQGAVTNMAGLPGKPGPKGEPGPEGMGRPGKPG
QPGLPGVQGPPGLKGIQGEPGLPGKGVQGPQGEPGVQGLPGIQGLPGPRGPPGPAGEKGA
KGSPGLKGAAGPMGPPGASISGPPGPDGQQGQTGLPGARGMPGEKGPQGEKGEPGECSCP
SRGDPIFSGMPGAPGLWMGSSWQPGPQGPPGVPGPPGPPGMPGLQGVPGNTGLPGQPGLT
AELGSLPIEQHLLKSICGDCVQGQTARPVAFLEKGEKGDQGVPGVPGLDSCARCFAERER
PRAEEARGDNGEGDLDCAGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAV
GSPGLPGLQGERGLRGPTGEKGEPGPPGQPGYPGAMGPPGLPGIKGERGYVGPAGEKGES
GPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPP
GPQAEKGSEGIRGAPGMPGPTGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLM
GPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHIGPPGPP
GQPGPAGISAMGLKGDRGATGERGLLGLPGQPGPPGHPGPPGEPGADGAAGKEGPPGKQG
LYGPPGPKGDPGPSGQKGQAGEKGRAGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAG
SPGLPGMPGSMGDMVNYDEIKRFIRQEILKMFDERMAYYTSRMQFPMEMAAVPGRPGPPG
KDGAPGRPGAPGSPGLPGQIGREGRQGVPGMRGLPGTKGEKGDIGIGIAGENGLPGPPGP
QGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKNM
KGPFG
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcaccttgggtccctggtttgtggctgctcagtctctgggccgtgtgcagccgg
ggggcagacacaggcgagcaatgccctccttcacaacaggaaggactcaagttggagccc
agaagccatttatcgaccaatgtgaccggctttaatctcatccgacgactcaacctcatg
aaaacatctgccatcaagaagatccgcaaccctaagggtcccctcatccttcgactgggg
gcagccgcgctcacccagccagtacgacgagtgttccctcggggcctccccgatgagttt
gccttagtgctgacactcttgctgaagaaacacacccaccagagcacgtggtatttattc
caagtgaccgatggagatgggtacccacagatttccctggaagtcaacagcccagagcgg
agtctggagctccgggcccggggccaagatggtgactttgtgtcctgcatcttccgggtg
ccccagctctttgacctgcgctggcacaagctggtgctgagcatgtctgaacgtgtggcc
tccgtgcatgtggactgcatctcagcctcctcgaagcctctggggccccggcaacccatg
cggcccgtgggccacgtctttctgggcttggatgctgagcaggggaagcccgtctcattc
gaccttcagcaggcacacatctactgtgacccagagcttgtgctggaggagggatgctgt
gagattttaccaggcgggtgtcccccagagacctccaaggctcgccgggatacccagagc
aatgagctcatcgagattaatccacagactgaaggcagggtctacacccgctgcttctgc
ctggaggagcctcaaaacagcaaggtggacgcccaacggacaggaagcatcagccagcag
gcagagaggggaacaaaggcccggcaggagacagcagccgatgagtgcccaccctgtgtc
catggtgcccggggaagcaacgtcacagtcggtccctctggacccaagggagggaaaggt
gagcgaggcctgcccggcccatcaggccccaagggagagaagggagcccggggcaatgac
tgtgtccgaatctccccggatgccccgcttcagtgtgcagaaggcccgaagggagagaag
ggggagtcaggagcgttgggaccctcaggacttccgggctctacaggccagaagggccag
aaaggcgagaagggagacggaggcatcaagggctcgccgggaaagccaggccgtgatggc
cggccgggggagatctgcgtcatggggcccaagggacaaaagggagaccctggcttcgtg
gggcctgaggggctggcaggagagcctgggcgccccggcctccctgggcctcctgggata
ggacttcctgggaccccaggggacccaggcggcccggcaggccctaaaggagacaagggc
agctcgggggtgccaggaaaggaaggtcctggtgggaaacctgggaagccaggggtgccg
gggctgaagggagagaagggtgacccctgtgaagtgtgcccaacgctgcctgaaggcttc
cagaactttgtggggctccctggaaagccaggacccaagggggagccaggcgatcctgca
ccagccaaggagggcctgggagctgttggatggaaaggtgatcggggagaccctggcatc
caaggccccaaaggagagaagggggactcctgcttatcctgcagcttagctgtagggtcc
cagcatcttgggccctccacaggggccaaaggagatacgggcgcccctggcttcggtttg
cctggcctcccggggaaagttggggctccagggccagcagggctgaaaggagagaagggt
aattttggggagacggggccagcgggccggcagggcccaccagggccagtgggagccaca
ggcatcaaaggggagaagggggagccttgtgagccatgcccagccctgtccagacctcag
gatggggacagctacacggtggccttgcctggccctcctggagagaagggagagaccggg
cctccaggcttcggcttaccaggaaaacagggcaaggctggagagcgtggactgaagggg
cagaagggtgatgctgggaatcctggagatcctggagtgccaggcaccacggggcagccg
ggactgtcgggagagcctggggttcggggtcccatgggcccgaaaggagaaaagggcgat
ggctgcactgcctgccccagcctgcagggggcagtgacgaacatggcgggactgcctggg
aagccaggccccaaaggagaaccggggccagaaggcatgggccggcctggtaaaccgggc
cagcctggtctacctggagttcaagggcccccaggactgaagggcatccagggagagcct
gggcttccaggaaagggagtccaagggccccagggggaacctggagtacagggtttgcct
ggtattcagggacttccaggacctcggggaccacctggacctgctggggagaagggtgcc
aaggggtctccaggactgaaaggggctgctgggcctatggggccccccggtgccagcatc
tctgggcctccgggcccagatgggcagcaaggacaaactggacttcctggagccagaggg
atgccgggtgaaaagggacctcagggagagaagggcgagcctggggagtgttcctgcccc
tctcggggggaccccatcttctctggcatgccgggtgctccgggactttggatgggcagc
tcctggcagccgggcccgcagggtcccccaggggttcccggaccacctggccctcctgga
atgcccgggctacagggagtgcctggaaacaccggtttgcctggacagcccgggctaact
gcggaactgggctccttaccaattgaacagcacctccttaagagcatctgtggggactgt
gtccaggggcaaacagcccgccccgtggcgttcctggaaaaaggagagaagggagaccaa
ggtgtccccggggtgccaggcctggacagctgtgcccggtgctttgcagagcgggaacgc
ccaagagctgaggaggcccggggagacaacggtgagggggacctagactgtgctgggagc
cctgggctgcccggtcctccaggactgcctggccagagaggagaagagggtccgcctggc
atgaggggctccccgggtcctccaggccctattggccccccaggttttcctggtgctgtt
ggctcccccggattgcctggtcttcaaggagaacgaggcctcaggggcccgacaggagag
aagggggaaccgggtcctccagggcaacctggttacccaggtgccatgggtcccccagga
ctgccaggcatcaagggggagcggggctatgtcgggcccgcaggagagaagggagaatcg
ggcccgccaggatctgaaggcctcccaggtcccccaggcccagcgggtccccgaggagag
cgaggaccccaagggaactcgggagagaagggtgaccagggatttcaaggccagccaggc
tttcccggcccaccgggcccccctggattcccaggcaaagctggagcacccggcccacct
gggccccaagcggagaagggcagcgaagggattcgaggcgcaccaggcatgcctggtccc
actgggccaccaggacctcctgggattcagggccctgctggcctggatggtttggatggg
aaggacggcaagcctggcttgaggggggaccctggtcctgctggcccccccggactcatg
ggacccccgggcttcaaggggaaaacgggacaccctggcctcccaggaccaaagggcgac
tgtgggaaaccaggtcccccaggcagcagtggccggcccggagcagagggtgaacctggt
gccatgggacctcagggaagacccggccccccaggccatatcgggccaccagggcctcca
ggacagccaggcccagctgggatctctgcaatgggcctaaaaggagaccggggagccact
ggagaaaggggccttctaggccttccaggccagcctggcccccccggacaccctgggccc
ccgggtgaacctggtgcagatggtgcggctggcaaagagggaccccctggaaaacagggg
ctctatggaccccctggtccaaagggtgatccgggaccttcaggacagaagggccaggca
ggagagaagggaagagctggcatgcctggcgggcctgggaagagtggctccatggggccc
attgggccaccgggtccagcaggagagagaggtcaccctggctctccggggcctgcgggg
agtcccggcttgcccgggatgcctggctccatgggagacatggtgaattatgatgaaatc
aagaggttcatcagacaagagatccttaaaatgtttgatgagaggatggcttactacacc
tccaggatgcagttccccatggagatggccgcagttccgggacgcccagggcccccaggg
aaggatggcgctccaggccggccaggcgctccggggtcacccggactccctggccagatc
ggcagggaaggacggcagggcgtgccaggaatgcgaggattgcccgggaccaaaggtgaa
aagggggacattggtatcggcattgcaggagaaaatggtctccccgggcccccaggtccc
caaggccctcccggctatggtaagatgggtgccactggaccgatgggccagcaaggcatt
cctggcatccctggccccccgggtcccatggggcagcccggaaaggccggccactgcaac
ccctccgactgctttggggccatgcccatggagcagcagtacccacccatgaagaacatg
aaggggccttttggctga
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