Mustela nigripes (black-footed ferret): 132003400
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Entry
132003400 CDS
T09425
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03030
DNA replication
mnp03420
Nucleotide excision repair
mnp03430
Mismatch repair
mnp03440
Homologous recombination
mnp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132003400 (RPA1)
03420 Nucleotide excision repair
132003400 (RPA1)
03430 Mismatch repair
132003400 (RPA1)
03440 Homologous recombination
132003400 (RPA1)
03460 Fanconi anemia pathway
132003400 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mnp03000
]
132003400 (RPA1)
03032 DNA replication proteins [BR:
mnp03032
]
132003400 (RPA1)
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132003400 (RPA1)
Transcription factors [BR:
mnp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132003400 (RPA1)
DNA replication proteins [BR:
mnp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
132003400 (RPA1)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
132003400 (RPA1)
MMR (mismatch excision repair)
132003400 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
132003400 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
A_deaminase
Motif
Other DBs
NCBI-GeneID:
132003400
NCBI-ProteinID:
XP_059234809
LinkDB
All DBs
Position
16:44897404..44975037
Genome browser
AA seq
616 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPIITGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQINRFIVNTLKDGRRVVILMELDILKSAEAVGLKIGNPVPYNE
GHGQQQVVPPPVSAANPPASKPPQQNGSSAMGSTASKTYGASKTFGKAGGTSLGNSSGGT
QVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVTPCEDGHHLPTVQF
DFTGIGDLENKPKDSLIDIIGICKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATL
WGEDADRFDGSRQPVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALDGISISDVKSGGTGGINTNWKTLYEAKSENLGHGDKADYFSSVATIVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAII
GQSTAHLGELKEKNEQAFEEVFQNANFRSFIFRIRVKLETYNDESRIKATVIDVKPVDYK
EYGRRLIMNIRRNALM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaaacccatcctccaagtcattaacatccgtcccattattacagggaatagtccaccc
cgttatcgactgcttatgagtgatggcttgaacactctatcctctttcatgttggcaaca
cagttgaaccctctcgttgaggaagaacgattgtctagcaactgtatttgccagattaac
cgattcattgttaacaccctgaaagatggaaggagagtagttattttgatggagttagac
attttgaaatcagctgaagccgttggattaaagattggcaatcctgtgccctataatgaa
ggacacgggcagcagcaggtagttcctccccctgtctcagcggccaatccaccagccagc
aagcccccgcagcaaaatgggagctcagcaatgggttccactgcatctaagacttatggg
gcctcaaagacatttggaaaagctggaggtaccagcctcgggaatagttctggaggaaca
caggtcaaagtggtacccattgccagcctcaccccttaccaatccaagtggactatctgt
gctcgagttaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaag
cttttctccatagaactagttgatgaaagtggtgaaatcagagctactgctttcaatgag
caagtggacaagttctttccccttatcgacatgaacaaggtctattatatttctaaaggc
atcctgaagattgctaacaaacagttcacagcggttaaaaatgactacgagatgaccttc
aacaatgagacttccgtcacgccctgtgaagatggtcatcatttacctacagttcagttt
gatttcacagggattggagacctggagaacaagcctaaagactcacttatagacataatt
gggatctgcaagagctacgaagatgccaccaaaatcacagtgaagtctaacaacagagaa
gtttccaagagaaatatctatttgatggacatgtcagggaaagtggtgactgctactctg
tggggagaggatgctgatagattcgatggttctagacaacccgtgatggctatcaaagga
gctagagtttctgattttggtggacggagcctctctatactgtcttcaagcacggtcatt
gtgaatcctgacatcccggaggcctataagcttcgtggatggttcgactcagaaggacaa
gccttagatggtatttctatctctgatgtaaagagtggaggaacaggaggaatcaatacc
aactggaaaactttgtatgaggctaaatcagagaacctgggccatggtgacaaggctgac
tatttcagctctgtggcgacgatagtgtatcttcgcaaagaaaactgtatgtatcaggcc
tgcccaactcaggactgcaataagaaagtgattgatcaacagaatggactataccgctgt
gagaagtgcgacagtgaatttcccagcttcaagtaccgcatgatcctgtcggtaaatatt
gctgattttcaagagaatcagtgggtcacttgtttccaggagtctgcagaggccatcatt
ggacaaagcactgctcatcttggggagttaaaagagaagaatgaacaagcatttgaggaa
gttttccagaatgccaacttccgatctttcatattcagaatcagggtgaaactagagacc
tacaatgatgagtctcgaattaaggccactgtgatagacgtgaagcccgtggactacaaa
gaatatggcagaaggctgatcatgaacatcaggagaaacgcgctcatgtga
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