Mustela nigripes (black-footed ferret): 132003979 Help Entry 132003979         CDS       T09425                                  Symbol COL1A1 Name (RefSeq) collagen alpha-1(I) chain   KO K06236   collagen type I alpha Organism mnp  Mustela nigripes (black-footed ferret) Pathway mnp04151   PI3K-Akt signaling pathway mnp04510   Focal adhesion mnp04512   ECM-receptor interaction mnp04611   Platelet activation mnp04820   Cytoskeleton in muscle cells mnp04926   Relaxin signaling pathway mnp04933   AGE-RAGE signaling pathway in diabetic complications mnp04974   Protein digestion and absorption mnp05146   Amoebiasis mnp05165   Human papillomavirus infection mnp05205   Proteoglycans in cancer mnp05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:mnp00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     132003979 (COL1A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     132003979 (COL1A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     132003979 (COL1A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     132003979 (COL1A1)  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     132003979 (COL1A1)   09152 Endocrine system    04926 Relaxin signaling pathway     132003979 (COL1A1)   09154 Digestive system    04974 Protein digestion and absorption     132003979 (COL1A1)  09160 Human Diseases   09161 Cancer: overview    05205 Proteoglycans in cancer     132003979 (COL1A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     132003979 (COL1A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     132003979 (COL1A1)   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     132003979 (COL1A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     132003979 (COL1A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:mnp00536]     132003979 (COL1A1) Glycosaminoglycan binding proteins [BR:mnp00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    132003979 (COL1A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  132003979 NCBI-ProteinID:  XP_059235964 LinkDB All DBs Position 16:complement(25076018..25093523) Genome browser AA seq 1460 aa AA seqDB search MFSFVDLRLLLLLAATALLTHGQEEGQEEDIPPVTCVQNGLRYYDRDVWKPEACRICVCD NGNVLCDDVICDETKNCPGAQVPPGECCPVCPDGEASPTDQETAGVEGPKGDTGPRGPRG PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPS GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSE GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPS GPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPP GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP GAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGEA GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA GPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP GQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSP GRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPVGAR GPTGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP GSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQP PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKM CHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPQVAQKNWYISKNPKEKRHV WYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL KKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAP LDVGAPDQEFGMDIGPVCFL NT seq 4383 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg cacggccaagaggagggccaagaagaagacatcccaccagtcacctgcgtacagaacggc ctcaggtactacgaccgagacgtatggaaacccgaggcctgccggatctgtgtctgcgac aacggcaacgtgttgtgcgatgacgtgatctgcgacgaaaccaagaactgccccggcgcc caagtccccccgggcgagtgctgccccgtctgccccgatggcgaggcgtcacctaccgac caagaaaccgcaggagtcgagggacccaagggagacactggcccccgaggtccaagggga cctgcgggcccccctggccgagatggtatccccggacagcctggacttcccggacccccc ggacctcccggaccccccggaccccctggcctcggaggaaactttgctccccagatgtct tatggctatgatgagaaatcaactggaggaatctccgtgcctggccccatgggtccttct ggtcctcgtggtctccctggccctcctggcgcacctggtccccaaggtttccaaggcccc cctggtgagcccggcgagcctggagcctcaggtcccatgggtccccgcggtccccctggt ccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtcctggtgagcgt ggccctcctggacctcagggtgctcggggattgcctggaacagctggccttcctggaatg aagggacacagaggtttcagtggtttagatggtgccaagggagatgctggtcctgctggt cccaagggtgagcctggtagtcctggtgaaaatggagctcctggtcagatgggcccccgt ggtctgcctggtgagagaggccgccctggagcccccggccctgctggtgctcgtggaaat gatggtgctactggggctgctggaccccccggtcccaccggccccgctggtcctcctggc ttccctggtgctgttggtgctaagggtgaagctggtccccaaggagcccgaggctctgag ggtccccagggtgtgcgtggtgagcccggcccccctgggcctgctggtgctgctggtcct gctggaaaccctggtgctgatggacagcctggtgctaaaggtgctaacggcgctcctggc attgctggtgctcccggcttccccggcgcccgagggccctctggaccccagggccccagc ggtcctcctggtcccaagggtaacagcggtgaacctggtgctcccggcaacaaaggagac actggcgccaagggagagcccggacccactggtattcaaggaccccctggccccgctggg gaagaaggaaagcgaggagcccgaggtgaacctggacccactggcctgcctggaccccct ggcgagcgtggtggacctggtagccgcggtttccccggtgcagatggtgttgctggtccc aagggtcctgccggtgaacgtggttcccccggccccgctggccccaaaggttctcctggt gaagctggtcgccctggtgaagctggtctgcccggtgccaagggtctgactggaagtccc ggcagccccggtcccgacggcaaaaccggcccccctggtcctgctggtcaagatggtcgc cccggacccccaggcccccctggtgcccgtggtcaggctggcgtgatgggcttccctggg cctaaaggtgctgctggagagcccggcaaggctggagagcgaggcgtgcctggtcccccc ggtgctgttggtcctgctggcaaagatggagaagctggagctcagggagcccctggccct gccggccccgctggcgagagaggtgaacaaggtcccgctggctcccccggattccagggt ctccctggccccgctggtcctcctggtgaagctggcaaacccggcgaacagggtgttcct ggtgaccttggtgcccccggcccctctggagcaagaggcgagagaggtttccccggtgaa cgcggcgtgcaaggaccccccggccccgcaggtccccggggagccaatggtgcccctggc aatgacggtgctaagggtgatgctggtgcccctggagccccaggtagccagggcgctcct ggccttcagggaatgcctggtgaacgaggcgcagctggtcttcctggtcctaagggtgac agaggtgatgctggtcccaaaggtgctgacggttctcccggcaaagatggtgtccgtggt ctgactggccccattggtcctcctggccccgctggtgctcctggtgacaagggtgaagca ggtcctagcggccctgctggtcccactggagctcgtggcgcccccggagaccgcggtgag cctggtccccccggccctgctggcttcgctggcccccctggtgctgatggccaacccggt gctaaaggcgaacccggtgatgctggtgctaaaggcgacgcaggtcccccaggccccgct ggccccactggcccccccggccccattggtaacgttggtgctcctggacccaaaggtgct cgcggcagtgctggtccccctggtgctaccggtttccctggtgctgctggccgagtcggt ccccccggcccctctggaaatgctggaccccctggccctcccggccccgctggcaaagaa ggcggcaaaggtccccgtggtgagactggccccgctggacgtcccggtgaagtcggaccc cccggtccccccggccccgctggcgagaaaggatcccctggtgccgacggaccagctggt gctcccggcactcccggacctcaaggcattgctggacagcgtggtgtggtcggcctgccc ggtcagcgaggagagagaggcttccccggtcttcccggcccctctggtgaacctggcaaa caaggtccttctggagccagtggtgagcgtggcccccctggtcccatgggcccccctgga ttggctggaccccctggcgagtctggacgcgagggatctcctggtgctgaaggctcccct ggacgagatggttctcccggccccaagggtgaccgtggtgagaccggccctgctggaccc cccggtgctcccggtgctcccggtgcccccggccccgtcggccctgctggcaagagcggc gaccgtggtgagactggtcctgctggtcctgctggtcccattggccctgttggagctcgt ggtcccactggaccccaaggtccccgtggtgacaagggtgagacaggcgaacagggtgac agaggcataaagggccaccgtggcttctctggtctccagggtcctcctggtcctcccggc tctcctggtgaacaaggtccttctggagcttctggtcctgctggtccccgaggtccccct ggctctgctggctctcctggcaaagacggactcaacggtctcccaggccccatcggcccc cctggtcctcgcggtcgcactggtgatgctggtcctgttggtccccccggccctcctgga ccccctggtccccctggtcctcccagcggcggtttcgacttcagcttcctgccccagcca cctcaagagaaggctcacgatggcggccgctactaccgggccgatgacgccaatgtggtc cgggaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatcgaaaac atccggagccctgaaggaagccgcaagaacccagcccgcacctgccgtgacctcaagatg tgccactctgactggaagagcggagaatactggattgaccccaaccaaggatgcaacctc gatgccatcaaggtcttctgcaacatggagacaggtgagacctgcgtgtaccccactcag ccccaggtggcccagaagaactggtacatcagcaagaaccccaaggaaaagaggcacgtc tggtacggcgagagcatgaccgacggattccagttcgagtatggtggccagggctccgat cctgccgatgtggccatccagctgacgttcctgcgcctgatgtccaccgaggcttcccag aacatcacctaccactgcaagaacagcgtggcctacatggaccagcagaccggcaacctc aagaaggccctgctcctccagggctccaacgagatcgagatccgggccgagggcaacagc cgcttcacctacagcgtcacctacgacggttgcacgagtcacaccggagcctggggcaag acagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgatgtggcacca ttggacgttggcgccccagaccaggaattcggcatggatattggccctgtctgcttcctg taa

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