Mycobacterium noviomagense: MNVI_39010
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Entry
MNVI_39010 CDS
T06809
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mnv
Mycobacterium noviomagense
Pathway
mnv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MNVI_39010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mnv03400
]
MNVI_39010
Enzymes [BR:
mnv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MNVI_39010
DNA repair and recombination proteins [BR:
mnv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MNVI_39010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBY08583
UniProt:
A0A7I7PIY0
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All DBs
Position
complement(4072976..4073872)
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AA seq
298 aa
AA seq
DB search
MAVTHPDRVVFPGRSSRKGITKGEVVDYYAAVADAMLPHLYGRPLTLQRFPRGIDESGFI
QQDFGEAMPDWMESAEVAKEGGTVVHPLAQRPEALVWLANQNCITLHAWLSRRRRLNTPD
RLVFDLDPSGDDFPVVRATAHAVADVLDDIGLARYVKTTGSRGVHVVVPLRGDADFDTVR
QFARDVAAVVVADDPAHRTAEARKDKREGRVYIDVMRNAYAQTAVAPYSVRARPGAPVAT
PLEWDELDNRGMRPDRFTLRDIPKRLAGQPDPWTDMNRHARSLTGPAGRLAKLHAGTS
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
gtggcggtcacccatccggatcgggtcgtgtttcccggccgctcctcgcgaaaaggcatc
accaagggcgaggtggtggattactacgctgcggtggccgacgcgatgttgccgcacctc
tacggccggccgctgaccttgcagcggttcccgcgcggcatcgacgagtcggggttcatc
cagcaggatttcggcgaagcaatgcctgactggatggagtcggccgaagtcgccaaggaa
ggcggcacggtcgtgcacccgctggcccagcgcccggaggcgctggtgtggttggccaac
cagaactgcatcacgctgcatgcctggctgtctcggcgacgccggctgaacacgccagat
cgactggtgttcgacctcgacccgtccggcgacgacttcccggtggtgcgggcaactgcg
cacgcggtcgccgacgtgctggacgacatcggcctggcacgctacgtgaagacgacgggt
tcgcgcggggtgcatgtggtggtgccgttgcgcggcgacgccgacttcgacacggtccgc
caattcgcgcgcgacgtcgccgccgtggtggtggccgacgacccggcacaccgtacggcg
gaagcccgcaaggacaagcgcgagggacgggtgtatatcgatgtgatgcgaaacgcgtac
gcgcagacagcggtcgcgccctactcggtgagggcccgcccgggcgccccggttgccacc
ccactggaatgggacgaactcgacaaccgaggcatgcgccccgaccggtttacgctgcgc
gatatcccgaaaagacttgcaggccaacccgatccatggactgatatgaaccggcacgcc
cgctcactgaccggcccggcagggcgcctggcgaaactgcatgccggaacttcctga
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