Methanocella paludicola: MCP_0613
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Entry
MCP_0613 CDS
T01142
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mpd
Methanocella paludicola
Pathway
mpd03030
DNA replication
mpd03410
Base excision repair
mpd03420
Nucleotide excision repair
mpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCP_0613 (lig)
03410 Base excision repair
MCP_0613 (lig)
03420 Nucleotide excision repair
MCP_0613 (lig)
03430 Mismatch repair
MCP_0613 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpd03032
]
MCP_0613 (lig)
03400 DNA repair and recombination proteins [BR:
mpd03400
]
MCP_0613 (lig)
Enzymes [BR:
mpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MCP_0613 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
MCP_0613 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MCP_0613 (lig)
DNA replication proteins [BR:
mpd03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MCP_0613 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MCP_0613 (lig)
DNA repair and recombination proteins [BR:
mpd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MCP_0613 (lig)
NER (nucleotide excision repair)
Other NER factors
MCP_0613 (lig)
MMR (mismatch excision repair)
Other MMR factors
MCP_0613 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DNA_ligase_OB_2
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
BAI60685
NITE:
MCP_0613
UniProt:
D1YW63
LinkDB
All DBs
Position
complement(592454..594178)
Genome browser
AA seq
574 aa
AA seq
DB search
MLFSALVDVFEKLRKTSSRLEKTAIIADFIKGVPADDLPVIVAFLTGRVFPLWDERKIGI
ASQTVIKIISTITYNPENKVVESYKNTGHLGVTAEEMFQKRKQTMFFEADEITVRNVYDT
FVEIARLTGAGSATKKQKVLIGLLHRATPKEAEYIVSLAMEYVLSGAKEGVMEEAIARAF
GVPVELVRRSNMLISDLGETARVAMLTGEAGLQAINIRPMRPVRPMLAQNVASIQEALDA
MGGRADFETKYDGARLQVHKLGDEVRLYSRRLENLTDALPEIVDYVRQSVKADSAILDSE
CIATDPKTGRPVPFQNILTRLRRIYNVEEKKKLFPLFLRPFDILYLDGESEIDKPFIERR
QILETTILPLDETCKPAMALITDDVKAAQDLFKESLKSGNEGLMAKDLNATYTPGVRGKK
MVKIKEVLDTLDLAIVSSEWGHGRKAGWLTSFEVAALDENTDQYVVLGRVASGFSDEQLQ
EMTERLKPLITAEHGRIVDVKPDVIVEVKFQEIQKSPIYSSGYALRFPRLVRVRDDLSPE
EVNTFGRVMNIYDISHGIGVKHAEPQPDGAQKEP
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgttattcagcgcgctagttgatgtttttgagaaactgagaaagacctcgagccgcctc
gagaagacggccatcatagctgactttatcaagggcgtcccggccgacgacctgcccgtc
atcgtcgcctttctgacgggccgggtgttcccgctctgggacgagcgcaagatcggcatc
gccagccagaccgtcatcaagatcatttccactattacctataatccggagaacaaggtc
gtcgagagctacaagaacacgggccacctgggcgtcacggccgaggagatgttccagaag
cgcaagcagaccatgttcttcgaggccgacgagatcaccgtacggaatgtttacgatact
ttcgtcgagatcgcgaggctgaccggcgccggctcggccacgaagaagcagaaagtgctc
atcgggctgctacaccgggccacgccgaaggaggcagaatacatcgtcagcctggccatg
gagtacgtgctctccggcgccaaagagggcgtcatggaggaggcgatcgcccgggctttc
ggcgtccccgtggagctcgtgcggaggtccaacatgctcatcagcgacctgggcgagacc
gccagagttgcgatgcttacgggcgaggcgggccttcaggccatcaacatccgccccatg
cgccccgtccgccccatgctcgcccagaacgtggccagcatccaggaggcgctggacgcc
atgggcgggagagcggacttcgagaccaagtacgacggcgcccgcctgcaggtccacaag
ctgggcgacgaggtgcggctctacagccgccgtctcgagaatttaacggacgccctgccc
gagatcgtggactacgtgaggcagagcgtgaaggccgactcggctatcctggatagcgag
tgcatcgctacggacccgaagaccggccgacccgtgccattccagaacatcctgaccagg
ctgcggcgcatctataacgtggaggagaagaagaagctgttcccgctcttcctgaggcct
tttgatatcctttatctcgacggcgagagcgagatcgataagccgttcatcgagcgccgg
cagatcctggagacgacgatactgcctcttgatgagacctgtaagccggcgatggcgctc
atcacggacgatgttaaggccgcgcaggacctgttcaaggagtccctgaagagcggcaac
gagggcctcatggccaaagacctgaacgccacgtacaccccgggcgtccggggcaagaag
atggtgaagatcaaggaagtcctggataccctggatctcgcgatcgtttcctcggagtgg
ggccatggccgcaaggcgggctggcttacctcgttcgaggtggccgccctggacgagaac
acggaccagtacgtggtgctcggccgggtcgcgagcggcttttccgacgagcagctccag
gagatgaccgagcgcctgaagcctcttataacggccgagcacggtcgtattgtagatgtt
aagccggacgtgatcgttgaggtgaagttccaggagatacagaagagcccgatctactct
agcggctacgcgctgcgcttcccgaggctggtgcgcgtgcgggatgacctgagccccgag
gaggtcaacaccttcgggcgtgtcatgaatatttacgatatctcgcacggtataggcgtt
aagcatgccgagcctcagccggatggggcacaaaaagagccttaa
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