Microlunatus phosphovorus: MLP_04810
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Entry
MLP_04810 CDS
T01535
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mph
Microlunatus phosphovorus
Pathway
mph03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MLP_04810 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mph03400
]
MLP_04810 (ligD)
Enzymes [BR:
mph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MLP_04810 (ligD)
DNA repair and recombination proteins [BR:
mph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MLP_04810 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BAK33495
UniProt:
F5XJZ9
LinkDB
All DBs
Position
complement(534656..537094)
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AA seq
812 aa
AA seq
DB search
MATAGSEQTVTVDGHAIKLTNLDKVLYPLTGTTKAEVIGYYAEIAAVMLPHLVDRPATRK
RWPDGVGDGTDSPTVFFNKNLARGTPDWVTRFTIAHRDHDNDYPVVNDLATLTWLGQLAA
LEIHVPQWRFGKDGQPRKPDRLVLDLDPGEGVSLDECAEVARWAKQILDDIGHLSVPVTS
GSKGIHLYAPLDGSLDAEQATEVARELAQALEADHPDEVTATMKRSLRAGKVFIDWSQNN
GAKTTVSPYSLRGRLHPWVAAPRTWEELAEPDLAQLDYTEVLERARNRPDPLAAFVTSAS
GISDPATADRLTTYRSMRDPAKTPEPVPATPPSGGSGDTFVIQEHHARRLHYDFRLEHDG
VLVSWAVPKGPPTDTGSNHLAVQTEDHPLEYATFAGDIPKGEYGGGHVKIWDSGTYELHK
WRDGKEVIVTLHGQPNGGLGGQARSYALIHTGGGSRQPEKNWLMHLMKEKPAYGGQEIPF
PAEVEAMLASPATPEEIRPAQDEYAYEMKWDGVRSIVSLAGHRVRMTSRRGRDDTAAYPD
LVSALTTIDVETAVLDGEIVVTDENGRPTFGLLQNRMNLTRPADIQHAVAAWPAQLMVFD
LLELNGRSLIREPYERRRELLEELLPEPVGGRVQVPPIFEGDLDAALETSRALRMEGVVA
KRHGSIYQPGRRSYTWRKIKYQQSQEVVIGGWRPGHGRREGGMGSLLLGIPDSEGLRYVG
RVGSGFNDHQLDEMDRLLAGLARHDSPLHGVPREDARDANWVEPELVGEVVYGELTGPGR
LRHPVWKGLRTDKSPDQVVWEGVDLEGISSES
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcgggcagtgaacagacggtgaccgtcgacggtcacgcgatcaagctgacc
aatctcgacaaggtcctctatccgctgaccggcaccacgaaggccgaggtgatcggctac
tacgccgagatcgccgccgtgatgctcccgcacctggtcgaccggccggcaacccgcaaa
cgctggccggatggcgtcggcgacgggaccgacagccccacggtcttcttcaacaagaat
ctggcccgcgggaccccggactgggtgacccgcttcacgatcgcccatcgcgatcatgac
aacgactaccccgtggtcaacgacctcgccaccttgacctggctgggccagctcgccgct
ctggagatccacgtaccgcagtggcggttcggcaaggacgggcagccgcgcaaaccggac
cggctggtgctcgacctcgatcccggggagggggtcagtctcgacgaatgcgcggaggtc
gcccgatgggcgaagcagatcctcgacgacatcggccatctgtccgtacctgtgacgtcc
ggcagcaagggcatccatctgtatgcacccctggacggcagtctcgatgcggagcaggcg
accgaggttgcccgcgagctggcccaggcgctggaggcggatcaccccgacgaggtcacc
gcgaccatgaagcgctcgctgcgcgcaggcaaggtgttcatcgactggagccagaacaat
ggggccaagaccacggtctcgccctattcgctccgcggccgactgcatccgtgggtcgcc
gcgccgcggacctgggaggaactcgccgagccggatctcgcccagctcgactacaccgaa
gtgctcgaacgggcccgcaaccgacccgatccactcgcggccttcgtgacgtccgcttcc
ggtatctctgatcccgcgactgcagatcggctcacgacctatcgcagcatgcgcgacccg
gccaagacccctgagccggtgccggccaccccgcccagcggcggatccggggacaccttc
gtgatccaggagcatcacgcgcgacggctgcactacgacttccggctggagcacgacggg
gtcctggtcagctgggcggtgccgaaagggccgccgaccgacaccggcagcaaccatctg
gccgtccagaccgaggatcatccgctggaatacgccacgttcgccggtgacatcccgaag
ggcgagtacggcggtggacacgtgaagatctgggactccggcacctacgaactgcacaag
tggcgcgacggcaaggaagtcatcgtcactctgcacggccagccgaacggtggtcttggt
gggcaggcccgctcctacgccctgatccacaccggtggcggcagtcgccagccggaaaag
aactggctgatgcacctgatgaaggagaaacctgcctatggcgggcaggagatccccttc
cccgctgaggtcgaggcgatgctggccagtccggccacgccggaggagatccggccggcc
caggacgagtacgcgtacgagatgaagtgggacggggtccgctcgatcgtctccttggcc
ggccatcgggtccggatgaccagccggcgcggtcgcgacgacaccgccgcctatccggac
ctggtgtccgcactgaccaccatcgacgtggagactgccgtattggacggcgagatcgta
gtgaccgacgagaacggccgcccgaccttcgggctgctgcagaaccggatgaatctgacc
cggccggccgacatccagcacgcggtggctgcctggcccgcccagttgatggtgttcgac
ctgctcgagttgaacgggcgatccctgatccgcgagccgtacgagcgtcgccgtgaactg
ctcgaagagctgctccccgagcctgtcgggggccgggtccaggtgccaccgatcttcgag
ggcgatctcgatgccgctctggagaccagtcgagcgctgcggatggagggggtggtcgcc
aagcgacacggttcgatctatcagccgggtcgacgtagctacacctggcgcaagatcaag
taccagcagtcccaggaggtggtgatcggcggctggcggcccggtcacggccgccgcgag
ggtggcatgggctcgctgctgctcggcatcccagactcagagggactgcgctatgtcgga
cgggtcggctccgggttcaacgaccatcagctcgacgagatggaccggctgttggccggt
ctggcgcgtcacgacagcccgctgcacggcgtgccgcgagaggacgcgcgggacgccaac
tgggtcgagcccgagctggtcggcgaagtcgtctacggcgagctgaccggaccgggccgg
ctgcggcatccagtctggaagggactccgcacagacaaatcacccgaccaggtcgtctgg
gaaggcgtcgatctggagggcatcagctcggagagctga
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