KEGG   Pseudoduganella plicata: E1742_00515
Entry
E1742_00515       CDS       T06563                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mpli  Pseudoduganella plicata
Pathway
mpli03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mpli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E1742_00515 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mpli03400]
    E1742_00515 (ligD)
Enzymes [BR:mpli01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E1742_00515 (ligD)
DNA repair and recombination proteins [BR:mpli03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E1742_00515 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QBQ34835
UniProt: A0A4P7BBL9
LinkDB
Position
120756..123479
AA seq 907 aa
MNDSLKTYKAKRNFAITPEPAEGGEVGVEALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPEKQYGAGKVIIWDKGTWHPLGDPHQGYR
DGNLKFELRGHKLRGKWVLIRMKRSGEKQEPWLLIKEKDDYVRSADEFSVIDEMPDSVRM
LGMPTAEQLTPAAGEAEETAREHAAPARKKAAAGKTPAKTAPAKSAPAKTAVEKKPARKG
AGKEAPAVGSRVALPDTFTPELATLVDAPPGDPHDWLFEIKFDGYRLLARVDGKDIRLIT
RNGNDWTHKLEPLRDAIEKMKLPKGWYDGEIVVHDASGRPNFGLLQQAFDGTRTSNIVYF
IFDAPYLDGYDLRDVPLAQRRELLKTVMDRAGNDVVRYSAELDAPPQEMVAAACQMGLEG
IIGKRRDSTYVSRRSPDWIKLKCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYGEDGKLHY
AGNVGAGFNETGLRDIVARLKKLASDTNPFAPTKAIEKRAHWVKPTLVAEVTFGEWTGSG
SIRHSVFQGLRADKKATSVTREKAAHMETLVEGTMQTQSAAKAAKAKPAAKTKAAAKPEE
KRAPAGLDADSRLPASLKVTNPDRLIDPASGTTKIGLVRYYALVADLMLEHLKGRPVALV
RAPAGVGGELFFQKHSETGKLPGVKQFPQELDPDHPPMLEVATMQGLLSSAQWNVVEFHT
QNAFGKNYEKPNRMIFDLDPGQDVSWKQIQEAAQLMRAFLAELGLPSFLKTSGGKGLHVV
VPIKPQHDWDTMKGFTKAIVEHMSATLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTVAA
WSARTRAGLGISVPVDWSELEHLRGGDHWTVATVHDRLDEGNTPWADYAKSAVSITKAMK
QLGYTGP
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgaacgattccctcaaaacctataaagccaagcgcaacttcgccatcacgccggagccg
gcggagggcggcgaggttggggtggaggcactgaccttcgtcatccagaaacactgggcg
acgcggctgcattacgactttcgcctggagctggacggcacgatgaaaagctgggccgtg
ccgaaagggcccagttacgacacgcacgacaagcgcatggcggtccatgtcgaagaccat
cccatttcgtacaacgacttcgagggcacgatcccggaaaagcagtacggcgccggcaag
gtcatcatctgggacaagggcacgtggcatcctctcggcgatccgcaccagggctaccgc
gacggcaacctgaagttcgagctgcgtggccacaagctgcgcggcaaatgggtgctgatc
cgcatgaaacgctcgggcgagaaacaggaaccgtggctgctgatcaaggagaaggacgac
tacgtgcgctccgccgacgagttttccgtcatcgacgagatgcccgacagcgtcaggatg
ctgggcatgccgacggccgagcagctgacgccggccgccggggaggccgaggaaacggcg
cgcgagcatgcggcgccggcccgcaagaaagcggcagcaggcaagacgccggcaaagacc
gcaccggcaaagagcgcaccggcaaagaccgccgtggagaagaagccggcccgcaagggc
gccggcaaggaggcgccggcagtcggcagccgcgtggcgctgcccgacacgttcacgccc
gagctggcgacgctggtcgatgcgccgcccggcgatccgcacgactggctgttcgagatc
aagttcgacggctaccggctgctggcccgcgtggatggcaaggacatccgcctgatcacg
cgcaacggcaatgactggacgcacaagctcgaacccttgcgcgacgcgatcgaaaagatg
aagctgccgaaaggctggtacgacggcgagatcgtcgtccacgacgcgagcggccggccc
aatttcggcctgctgcagcaggcgttcgacggcaccaggaccagcaatatcgtctacttc
atcttcgatgcgccttacctggacggctacgacctgcgcgacgtgccgctggcgcagcgc
cgcgaactgctcaagaccgtgatggaccgcgcgggcaacgacgtcgtgcgctactcggcc
gaactggacgccccgcctcaggagatggtggctgcagcctgccagatgggcctcgaaggc
atcatcggcaagcgccgcgattcgacgtatgtatcgcgccgctcgcccgactggatcaag
ctcaaatgcgcgcagcgccaggagttcgtcatcggtggctatacggatccgaagggatcg
cgcgtgggcatcggctccctgctgctggggtactacggcgaagacggcaagctgcactac
gccggtaacgtgggcgctggctttaatgaaacgggcttgcgcgacattgtcgcccggctg
aagaagctggccagcgacaccaacccgttcgcgccgaccaaggcgatcgagaagcgcgcg
cactgggtcaaaccgactctggtggccgaggtgacgttcggcgaatggacgggcagcggc
tcgatccggcattccgtcttccagggactgcgcgcggacaagaaggcaacgagcgtgacg
cgcgagaaggcggctcatatggaaacgctggtggagggaaccatgcagacacagagtgcg
gcgaaggctgcgaaagcaaaaccggcggcaaagacgaaagccgcggcaaaacccgaagaa
aagcgcgcgccggcaggactggacgcggacagccggctgccggcgtcgctgaaggtgacg
aacccggaccgcctgatcgacccggccagcggcacgaccaagatcggcctggtgcgctac
tacgcgctggtggcggacttgatgctggaacacctgaaggggcggcccgtcgcgctggtg
cgggcgcccgccggtgtcggcggcgagctgttcttccagaagcactcggaaacaggcaag
ctgcccggcgtgaagcagttcccgcaggagctcgacccggaccatccgccgatgctcgaa
gtggcgacgatgcaggggttgctgtcgtcggcgcagtggaacgtcgtcgagttccacacg
cagaacgcgttcggcaagaactacgaaaagccgaaccgcatgattttcgacctcgacccc
ggccaggacgtgtcgtggaagcagatccaggaagcggcccagctgatgcgggcgttcctg
gccgagctgggtctgccgtcgttcctcaagacgagcggcggcaagggcctgcacgtcgtc
gtacccatcaagccgcagcacgactgggatacgatgaagggctttacgaaggcgattgtc
gaacacatgtcggcaacgctgccggaccggttcgcgttcaagagcgggcctaaaaaccgt
gtcggcaagatcttcatcgactacctgcgcaacggccgcggcgccaccaccgttgccgcc
tggtcggcccgcacgcgcgccggcctggggatctcggtgccggtcgactggagcgagctg
gaacacctgcgcggcggcgatcactggacggtcgccaccgtgcacgaccggctcgacgag
ggcaacacgccgtgggcggattacgcgaagagtgccgtcagcatcaccaaggcgatgaag
cagctggggtacacggggccctga

DBGET integrated database retrieval system