Pseudoduganella plicata: E1742_00515
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Entry
E1742_00515 CDS
T06563
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpli
Pseudoduganella plicata
Pathway
mpli03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E1742_00515 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpli03400
]
E1742_00515 (ligD)
Enzymes [BR:
mpli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E1742_00515 (ligD)
DNA repair and recombination proteins [BR:
mpli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E1742_00515 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBQ34835
UniProt:
A0A4P7BBL9
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All DBs
Position
120756..123479
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AA seq
907 aa
AA seq
DB search
MNDSLKTYKAKRNFAITPEPAEGGEVGVEALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPEKQYGAGKVIIWDKGTWHPLGDPHQGYR
DGNLKFELRGHKLRGKWVLIRMKRSGEKQEPWLLIKEKDDYVRSADEFSVIDEMPDSVRM
LGMPTAEQLTPAAGEAEETAREHAAPARKKAAAGKTPAKTAPAKSAPAKTAVEKKPARKG
AGKEAPAVGSRVALPDTFTPELATLVDAPPGDPHDWLFEIKFDGYRLLARVDGKDIRLIT
RNGNDWTHKLEPLRDAIEKMKLPKGWYDGEIVVHDASGRPNFGLLQQAFDGTRTSNIVYF
IFDAPYLDGYDLRDVPLAQRRELLKTVMDRAGNDVVRYSAELDAPPQEMVAAACQMGLEG
IIGKRRDSTYVSRRSPDWIKLKCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYGEDGKLHY
AGNVGAGFNETGLRDIVARLKKLASDTNPFAPTKAIEKRAHWVKPTLVAEVTFGEWTGSG
SIRHSVFQGLRADKKATSVTREKAAHMETLVEGTMQTQSAAKAAKAKPAAKTKAAAKPEE
KRAPAGLDADSRLPASLKVTNPDRLIDPASGTTKIGLVRYYALVADLMLEHLKGRPVALV
RAPAGVGGELFFQKHSETGKLPGVKQFPQELDPDHPPMLEVATMQGLLSSAQWNVVEFHT
QNAFGKNYEKPNRMIFDLDPGQDVSWKQIQEAAQLMRAFLAELGLPSFLKTSGGKGLHVV
VPIKPQHDWDTMKGFTKAIVEHMSATLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTVAA
WSARTRAGLGISVPVDWSELEHLRGGDHWTVATVHDRLDEGNTPWADYAKSAVSITKAMK
QLGYTGP
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaacgattccctcaaaacctataaagccaagcgcaacttcgccatcacgccggagccg
gcggagggcggcgaggttggggtggaggcactgaccttcgtcatccagaaacactgggcg
acgcggctgcattacgactttcgcctggagctggacggcacgatgaaaagctgggccgtg
ccgaaagggcccagttacgacacgcacgacaagcgcatggcggtccatgtcgaagaccat
cccatttcgtacaacgacttcgagggcacgatcccggaaaagcagtacggcgccggcaag
gtcatcatctgggacaagggcacgtggcatcctctcggcgatccgcaccagggctaccgc
gacggcaacctgaagttcgagctgcgtggccacaagctgcgcggcaaatgggtgctgatc
cgcatgaaacgctcgggcgagaaacaggaaccgtggctgctgatcaaggagaaggacgac
tacgtgcgctccgccgacgagttttccgtcatcgacgagatgcccgacagcgtcaggatg
ctgggcatgccgacggccgagcagctgacgccggccgccggggaggccgaggaaacggcg
cgcgagcatgcggcgccggcccgcaagaaagcggcagcaggcaagacgccggcaaagacc
gcaccggcaaagagcgcaccggcaaagaccgccgtggagaagaagccggcccgcaagggc
gccggcaaggaggcgccggcagtcggcagccgcgtggcgctgcccgacacgttcacgccc
gagctggcgacgctggtcgatgcgccgcccggcgatccgcacgactggctgttcgagatc
aagttcgacggctaccggctgctggcccgcgtggatggcaaggacatccgcctgatcacg
cgcaacggcaatgactggacgcacaagctcgaacccttgcgcgacgcgatcgaaaagatg
aagctgccgaaaggctggtacgacggcgagatcgtcgtccacgacgcgagcggccggccc
aatttcggcctgctgcagcaggcgttcgacggcaccaggaccagcaatatcgtctacttc
atcttcgatgcgccttacctggacggctacgacctgcgcgacgtgccgctggcgcagcgc
cgcgaactgctcaagaccgtgatggaccgcgcgggcaacgacgtcgtgcgctactcggcc
gaactggacgccccgcctcaggagatggtggctgcagcctgccagatgggcctcgaaggc
atcatcggcaagcgccgcgattcgacgtatgtatcgcgccgctcgcccgactggatcaag
ctcaaatgcgcgcagcgccaggagttcgtcatcggtggctatacggatccgaagggatcg
cgcgtgggcatcggctccctgctgctggggtactacggcgaagacggcaagctgcactac
gccggtaacgtgggcgctggctttaatgaaacgggcttgcgcgacattgtcgcccggctg
aagaagctggccagcgacaccaacccgttcgcgccgaccaaggcgatcgagaagcgcgcg
cactgggtcaaaccgactctggtggccgaggtgacgttcggcgaatggacgggcagcggc
tcgatccggcattccgtcttccagggactgcgcgcggacaagaaggcaacgagcgtgacg
cgcgagaaggcggctcatatggaaacgctggtggagggaaccatgcagacacagagtgcg
gcgaaggctgcgaaagcaaaaccggcggcaaagacgaaagccgcggcaaaacccgaagaa
aagcgcgcgccggcaggactggacgcggacagccggctgccggcgtcgctgaaggtgacg
aacccggaccgcctgatcgacccggccagcggcacgaccaagatcggcctggtgcgctac
tacgcgctggtggcggacttgatgctggaacacctgaaggggcggcccgtcgcgctggtg
cgggcgcccgccggtgtcggcggcgagctgttcttccagaagcactcggaaacaggcaag
ctgcccggcgtgaagcagttcccgcaggagctcgacccggaccatccgccgatgctcgaa
gtggcgacgatgcaggggttgctgtcgtcggcgcagtggaacgtcgtcgagttccacacg
cagaacgcgttcggcaagaactacgaaaagccgaaccgcatgattttcgacctcgacccc
ggccaggacgtgtcgtggaagcagatccaggaagcggcccagctgatgcgggcgttcctg
gccgagctgggtctgccgtcgttcctcaagacgagcggcggcaagggcctgcacgtcgtc
gtacccatcaagccgcagcacgactgggatacgatgaagggctttacgaaggcgattgtc
gaacacatgtcggcaacgctgccggaccggttcgcgttcaagagcgggcctaaaaaccgt
gtcggcaagatcttcatcgactacctgcgcaacggccgcggcgccaccaccgttgccgcc
tggtcggcccgcacgcgcgccggcctggggatctcggtgccggtcgactggagcgagctg
gaacacctgcgcggcggcgatcactggacggtcgccaccgtgcacgaccggctcgacgag
ggcaacacgccgtgggcggattacgcgaagagtgccgtcagcatcaccaaggcgatgaag
cagctggggtacacggggccctga
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