Mycobacterium sp. JS623: Mycsm_06981
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Entry
Mycsm_06981 CDS
T02423
Name
(GenBank) ATP dependent DNA ligase-like protein,ATP dependent DNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mycsm_06981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_06981
Enzymes [BR:
msa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mycsm_06981
DNA repair and recombination proteins [BR:
msa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mycsm_06981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGB27082
UniProt:
L0J8X6
LinkDB
All DBs
Position
pMYCSM02:67492..68517
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AA seq
341 aa
AA seq
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MAAYRRVVAVHAAGARHGSPEPMLATLRPVPASGDGVAVEWKYDGQRTAVVVDPTGTWIV
SRNGVDVSRTFPELAAIGDEFGGRRVILDGEIVAVDAQGRPSFTRLQRRWPQHRRPTPTL
LREVPVRVLAFDIVALGNRSLTGLPYCERRDILAELTDGLTSPVLTVPQSFSDVSPADML
QIAGQHGMEGVVVKRVDSPYVSGRTTLWTKHPVRSTAQLLIVAFWHAGGPGGARSVGSVL
LAGHNAAGDLVVVGQVGTGFSASTRRHLFELLDPIRRTDPPVVSAPEVPGAVWVQAETVG
EVAYREYVAGRWLRHTSWKGLRDAVDPATVAVPPVTAPLDP
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtaccgtcgtgtcgtggccgttcatgccgccggggcgcgccacgggtcgcca
gaacccatgctggccacgttgcggcctgtgccggccagcggcgacggcgtagctgtggag
tggaaatatgacggccagcgcacggcggtggttgtcgaccccacgggcacctggatcgtg
tcgcgtaacggcgtcgacgtgtcgcgcacgttccctgagctggcggcgataggagacgag
ttcggtgggcgccgcgtcatcctcgacggggagatcgttgccgtcgatgcgcagggccgg
ccgtcgttcacccggctgcagcgtcgatggccgcagcaccgccgcccgaccccgaccctg
ctgcgcgaagttcccgttcgcgtgctcgccttcgacatcgtcgccctcggcaaccgatcc
ttgaccggcctgccctattgcgagcgacgcgacatcctcgccgagttgaccgacggtctc
acgtcgcctgttctgaccgttccgcagtctttctcggacgtgtcgccggcagacatgctg
cagatagcgggccagcacggcatggagggtgtcgtcgtcaaacgcgttgactcgccgtat
gtttcgggtcgtacgacgttgtggaccaagcacccggtgcggtcgaccgcgcagctgctc
atcgtcgcgttctggcatgcgggcgggcccggcggcgcccgcagcgtgggctctgtgctc
ttggctggtcacaacgctgccggggacctggtggtagtcggccaggtgggcaccgggttc
agcgcgtcgacgcgtcggcacctgttcgagctgctcgacccgatacgccgcacggatccg
ccggtcgtatccgcgccggaggtcccgggcgctgtgtgggtccaggccgaaaccgtcggg
gaggtcgcctaccgcgagtatgtcgctgggcggtggctgcgccacacgagctggaagggt
ctgagggacgccgtcgacccggcgacggttgccgtaccacctgtaaccgcgcccctcgat
ccgtga
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