Mycobacterium saskatchewanense: MSAS_04120
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Entry
MSAS_04120 CDS
T07413
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msak
Mycobacterium saskatchewanense
Pathway
msak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSAS_04120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msak03400
]
MSAS_04120
Enzymes [BR:
msak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSAS_04120
DNA repair and recombination proteins [BR:
msak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSAS_04120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBX61238
UniProt:
A0A1X2CH25
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All DBs
Position
complement(420018..420908)
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AA seq
296 aa
AA seq
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MGRTAVEVTHPDRVLFPADGITKSDLVDYYAAVAGAMLPHLKGRPLNAQRFPRGIAEPGF
LQQDFADSLPDWMGRVEVVKEQGTVVHPVAESPEALRWLANQNCITLHAWQSRRNGLNHP
DRLVFDLDPSDSDFAVVRATARTVAGVLQDLGLVAYVQVTGSRGVHVVAPVRPDTDFDTA
RQFTRDVAELVAADDPVHRTVEVRKQKRGGRVYLDVMRNAYAQTAVAPYSVRPRAGAPVA
TPLEWDELDVPGLRADRFTVRDVSKRLTRQPDPWVGMSRHARSLAGPMRRLAKLRA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgggccggaccgcggtcgaggtcacccacccggaccgggtgttgtttccggccgacggc
atcaccaagagcgacctcgtcgactactacgcagcagtggccggcgccatgctcccacac
ctgaaggggcggccgctcaacgcgcagcgattcccgcgcggcatcgccgaaccaggcttc
ttgcaacaagatttcgccgattcgctgccggactggatgggccgtgtggaggtcgtcaaa
gaacagggcaccgtggtgcatccggtggccgaaagcccggaggcgttgcgctggctcgcc
aaccagaactgcatcaccttgcacgcctggcagtcccgccgaaacgggctgaatcacccc
gatcggctggtgttcgacctggacccgtccgactccgacttcgcggtggtgcgggcgacg
gcccgcacggtggccggagtgctgcaagacctcgggcttgtcgcctatgtgcaggtgacc
gggtcccgcggggtgcacgtggtggcgccggtgcgcccggacaccgacttcgacaccgcc
cgccagttcacccgcgacgtcgcggagctggtggcggccgacgaccccgtgcaccggacc
gtcgaagtccgcaagcagaagcggggcggccgggtgtacctcgacgtcatgcgaaacgcc
tacgcgcagacggcggtagcgccctactccgtgcggccccgggccggtgccccggtggcg
acgccgctggagtgggacgaactggacgtcccaggcctgcgggcggaccgcttcaccgtc
cgtgacgtctccaaacgtctgacacgacaacccgatccgtgggtgggcatgtcccggcac
gcccgctcactggccggcccgatgcggcggctggcgaagctgcgtgcctaa
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