Mycobacterium saskatchewanense: MSAS_24470
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Entry
MSAS_24470 CDS
T07413
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
msak
Mycobacterium saskatchewanense
Pathway
msak03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSAS_24470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msak03400
]
MSAS_24470
Enzymes [BR:
msak01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MSAS_24470
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MSAS_24470
DNA repair and recombination proteins [BR:
msak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MSAS_24470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Ribosomal_S13
zf-TFIIB
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
BBX63273
UniProt:
A0A1X2C6E9
LinkDB
All DBs
Position
complement(2633850..2634713)
Genome browser
AA seq
287 aa
AA seq
DB search
MPELPEVEALVDHLRRHAVGLTIGRVDVAAFSVLKTFDPPITALHGQAAVEAQRWGKYLG
LRVGDLWLIAHLSRAGWLRWSDKLAAAPLRPGKGPIALRVHLGTPGGAPGFDLTEAGTQK
RLAVWLVNDPKQVPGIAALGPDALELGVEELAGLLAGNTGRIKTVITDQKVIAGIGNAYS
DEILHVAKISPFATAGKLTDEQLTTLHDAMVSVLRDAVSRSVGQGAAMLKGEKRSGLRVH
ARTGMPCPVCGDTVREVSFADKSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaacttcccgaggtcgaagcgctggtcgaccacctgcggcgccacgccgtcgga
ctgacgatcggccgcgtcgacgtggccgccttctccgtcctcaagaccttcgacccgccg
atcaccgcgctgcacgggcaagcggcggtcgaggcgcaacggtggggcaagtacctgggg
ctgcgggtcggcgacctgtggctgatcgcccacctgtcccgcgcgggatggttgcgctgg
tccgacaagctggccgcggcgccgttgcggccgggcaagggcccgatcgcgctgcgtgtg
cacctgggtacgcccggcggggcgcccggcttcgacctcaccgaggcggggacgcagaag
cggctggcggtgtggctggtgaacgatcccaagcaggtgccgggaatcgccgcgctgggc
cccgacgcgctggaactcggggtcgaggagctggccgggctcctggccggcaacaccggc
cggatcaagaccgtgatcaccgaccagaaggtgatcgccggcatcggaaacgcctacagc
gacgagattctccacgtggccaagatttcgccgttcgcgacggcggggaagctgaccgac
gagcagctcaccaccctgcacgacgcgatggtgtccgtcctgcgcgatgcggtgagccgt
tcggtcggtcagggggccgccatgctgaaaggggagaagcgatccgggctgcgggtgcac
gcccgcaccgggatgccgtgccccgtctgcggggacaccgtgcgcgaggtttcgttcgcg
gacaagtcttttcagtactgtccgacatgccagaccggcggtaaggtgctggctgaccgg
cggatgtcgcggctgctcaagtaa
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integrated database retrieval system
