Myxococcus stipitatus: MYSTI_01057
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Entry
MYSTI_01057 CDS
T02436
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msd
Myxococcus stipitatus
Pathway
msd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYSTI_01057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msd03400
]
MYSTI_01057
Enzymes [BR:
msd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYSTI_01057
DNA repair and recombination proteins [BR:
msd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYSTI_01057
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
XMAP215_CLASP_TOG
Motif
Other DBs
NCBI-ProteinID:
AGC42406
UniProt:
L7U0S6
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All DBs
Position
complement(1329372..1330397)
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AA seq
341 aa
AA seq
DB search
MASRDANRWPVKRPDPRLHTDRRQRPPRRAPQPAPATGERRAPRAPAARTASPESSAPRP
GRAKLTHADRVLFPGSGLTKADVFAYYRDVAPLLVPVLEDRPIAVQQWPRGIEAPGFFRH
SLSGMPAWLPFLSVRHVHKTLRHVNVTGEEPLLWLANQSALTLHMWLSRAPQLSRPDFLV
MDLDPGDGGWPDVVAAALALRELLEQQGLEGFPKTSGKRGLHVLVPLAPGHTYARVRAHA
NALAKELERRLGTRATTVREVRARHGRLYLDAGQNARGKTVVAPYSLRAREPATFSAPLR
WSEVSPTLDPSRFNLRTLRARLDAVGDLFAPARKNPQRLPG
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgcgggatgccaaccgttggcccgtgaaacgccccgacccacgactccacacc
gaccggcgccagcggcccccacgccgcgctccccagcccgcacccgccaccggcgagcgc
cgcgcccccagggcccccgccgcgcgcaccgcgtcgcccgagtcctccgccccacgtcca
gggcgcgcgaagctcacgcacgcagaccgcgtcctcttccccgggagcggactgacgaag
gcggacgtcttcgcgtactaccgcgacgtggcgccgctgctcgtccccgtcctcgaggac
aggcccatcgccgtgcagcagtggccccggggaatcgaggcccccggcttcttccgccac
tcgctgtcgggcatgcccgcctggctcccgttcctgagcgtgcgccatgtgcacaagacg
ctgcggcacgtgaatgtgacgggcgaggagcccctgctctggctcgccaaccaatccgcg
ctcacgctgcacatgtggctgagccgagccccccagctctcgcggccggacttcctcgtc
atggacctggacccgggtgacggaggctggccggacgtcgtcgcggcggcgctcgcgctg
cgggagcttctggagcagcagggcctggagggcttccccaagacctccggcaagcgcggg
ctgcatgtcctggtgccgctggccccgggccacacctacgcgcgggtacgggcccacgcc
aatgccctggcgaaggaactcgagcgccggctggggacacgcgccaccacggtccgcgag
gtgcgcgcgcgtcacgggcggctctacctggacgcgggacagaacgcgcggggcaagacg
gtggtggcgccctactccctccgagcgcgcgagcccgcgaccttctcggcgcccctgcgc
tggagcgaggtgagtccgaccctggacccctcgcgcttcaacctccgcacgctgcgcgcg
cgcctggacgccgtgggggacctgttcgcgcccgcacggaagaacccacagcggctgccg
ggttga
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