KEGG   Methanolobus sediminis: RE474_01875
Entry
RE474_01875       CDS       T09570                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mseb  Methanolobus sediminis
Pathway
mseb03030  DNA replication
mseb03410  Base excision repair
mseb03420  Nucleotide excision repair
mseb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mseb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RE474_01875
   03410 Base excision repair
    RE474_01875
   03420 Nucleotide excision repair
    RE474_01875
   03430 Mismatch repair
    RE474_01875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mseb03032]
    RE474_01875
   03400 DNA repair and recombination proteins [BR:mseb03400]
    RE474_01875
Enzymes [BR:mseb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RE474_01875
    6.5.1.6  DNA ligase (ATP or NAD+)
     RE474_01875
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RE474_01875
DNA replication proteins [BR:mseb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    RE474_01875
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     RE474_01875
DNA repair and recombination proteins [BR:mseb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RE474_01875
   NER (nucleotide excision repair)
    Other NER factors
     RE474_01875
   MMR (mismatch excision repair)
    Other MMR factors
     RE474_01875
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: WMW25491
UniProt: A0AA51UKZ3
LinkDB
Position
complement(408473..410164)
AA seq 563 aa
MTSFKEFARACKVIEGTPGSLDMTALVAELLEKVTPEELPVVTHFVMGEIFPAWSSEEIG
VGAGILYSALAKSAGLSVADIKELVRETGDIGETAVKALKKVSTGQATFSSFMEDNSDLS
ILEVFERFQAISKTSGKGSQTSKMKNLQYLFNSASSEEVGYIARISVEELRIGVGEGIVR
DAISKAFDVPSEEIERAFMLTNDLGLVAVTAREGGRDAVQSLGLELNRPIRMMLAQVTPD
FEVALSDLGTAAVEWKFDGARVQIHKEGDNITLFSRRLENITDSLPDIVEAVRENIDAQS
AILDGEAVAIDENGRPRAFQDILKRFRRKYDVQSTAREIPLILNLFDIMYLNGEELLDLP
LVQRREKLESCVKSGDKIKVDTQFITDDLDRIMEIYNDALKAGHEGVMIKNPQSPYSPGK
RGKNWLKKKPVMETLDLVVIGAEWGYGRRTSFLGSYALACHDPDTGRFLPVGRVATGFSD
EQLAELTELFSDLIVTEVGTEVEIKPEVIFEVAFEEIQKSVNYESGYALRFPRLVNVRSD
KSIEDVETIGRLEEMYLVQRERN
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgacaagtttcaaagaatttgccagggcatgcaaggttatcgaagggactccgggttcc
cttgatatgactgctctggttgcagagttacttgaaaaggttactcctgaagaacttcct
gtagtaactcattttgtaatgggtgagatatttcctgcctggagcagtgaggagattggt
gtcggtgcaggtattctttacagtgcccttgcaaaatcagcaggactttcagttgctgat
atcaaggagctggtgagggaaaccggtgacatcggcgaaacagcagtcaaagcactgaaa
aaagtatcaaccggccaggctactttttcttcttttatggaagataattcagacctttca
attctggaggtttttgagagattccaggctatatccaaaacatccggcaaaggttcccag
acatctaagatgaagaatctccagtatctttttaattctgcctcatccgaagaagtaggc
tacatagctcgtatttcagtggaagagctgaggatcggagtaggtgaaggaattgtcaga
gacgcgatctcaaaggcttttgacgttccgtctgaagagattgaaagagctttcatgctt
acaaatgaccttggacttgtagccgtaaccgcaagagaaggcggcagggatgcagttcag
tccctgggacttgaacttaatcgtccaattcgtatgatgctggcacaggtaactcctgat
tttgaagttgcactttctgatctgggaaccgcagctgttgaatggaaattcgacggtgcc
agggttcagatccataaagaaggcgacaatattacacttttctcccgcaggcttgagaac
ataactgactctctgccggatattgtggaagctgtaagggaaaacatcgatgcgcagtct
gcaatacttgacggtgaggcagttgcaattgatgagaatggcaggccaagggcattccag
gacatactgaaacgtttcaggagaaagtatgatgtacagtcaactgcacgtgagattccc
ctcatactgaatctttttgatataatgtatctgaacggtgaggaattgcttgatcttcct
cttgtccagagaagagaaaaacttgaaagctgtgtcaagtcaggggataaaataaaggtt
gacacccagtttattacagatgatcttgacaggataatggaaatttacaacgatgccctg
aaagcaggtcatgaaggtgtcatgatcaagaatccgcagtctccttattctcctggaaag
aggggtaagaactggcttaagaaaaagccggtaatggagacactggaccttgtggttatc
ggagcagaatggggatacggaagacgtacaagtttccttggttcctatgcacttgcgtgt
catgaccctgatacaggccgtttcctgccagtagggcgtgtggcaacaggattttccgat
gaacagcttgcagaacttacagagctattttctgatcttattgtcactgaagttggcaca
gaggttgagatcaaacctgaggtcatctttgaggttgcctttgaagagatacagaaaagt
gtcaattacgagtcaggttacgctcttcgattcccaaggcttgtcaatgtaaggtctgat
aaatccattgaagatgtagagacaatcggccgtcttgaagagatgtatcttgtgcagcgt
gaaaggaactga

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