Mycolicibacterium senegalense: K3U95_28275
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Entry
K3U95_28275 CDS
T07649
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msen
Mycolicibacterium senegalense
Brite
KEGG Orthology (KO) [BR:
msen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msen03019
]
K3U95_28275 (hrpA)
Enzymes [BR:
msen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K3U95_28275 (hrpA)
Messenger RNA biogenesis [BR:
msen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K3U95_28275 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
AAA_16
ABC_tran
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
QZA24444
LinkDB
All DBs
Position
complement(5944467..5948357)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSEPSVAELRSRLDGLTIRDADRLRRRLRNLRGGDAAKIGPIAEQIAAAEALVLTRRAAV
PDITYPDLPVSEHRDELAKAISENQVVVVAGATGSGKTTQLPKICLELGRGIRGTIGHTQ
PRRLAARTVAQRIADELGTPLGDAVGYTVRFTDQASDSTLIKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAAHFDDAPIVEV
SGRTYPVEIRYRPLEVPAPVSDDEDPDDPDHEIVRTEVRDPTEAIVDAVRELESEPPGDV
LVFLSGEREIRDTAEALKDLRNTEVLPLYARLPTAEQQKVFQPSHSGRRIVLATNVAETS
LTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRSGRTAPGVCIRLYSE
KDFESRPRYTDPEILRTNLAAVILQMAALQLGDIAEFPFLDPPDPRSIRDGVQLLQELGA
FDASGALTDVGRRLARLPLDPRVGRMILQADTEGCVREVLVLAAALSIPDPRERPTDKEE
AARQKHARFADESSDFVSYLNLWNYLREQRNQRSGNAFRRMCREEFLHYLRIREWQDLTG
QLRSIARDIGIRESDEPAEPASIHAALTAGLLSHVGLREGDGRDYQGARNSKFVLAPGSV
LTRKPPRWIVVADLVETSRLFGRIAARVEPEAIERVAGHLVQRTYSEPHWEARRGEVVAF
ERVTLYGLPLVPRRKVGYAKIEPELSRELFIRHALVEGDWQTRHHFFRDNARLRAELEEI
EERARRRDLLVGDDEIYALYDTRIPADIVSARHFDAWWKKQRHKTPDLLTFTRDDLLQSE
DGADNPDTWQTGDLELPLTYRFEPGAADDGVTVHVPVGVLARLGGDGFAWQVPALREELV
TALIKSLPKDLRRNFVPAPDTARAILGDIDPSAGSLLDEVQRELRRRSGILVPIDAFDLS
KIPDHLRMTFAVENADGKEVARGKDIDALREQLAVPVAQAVADALGGDLERTGLRAWPED
LDELPRTVENVSGGHTVRGYPAFVDTGKAVDIKVFANPADQAAAMRPGLRRLLRLTVASP
VKTIERGLSTRTRLALNANPDGTLVALLDDCADAAADVLVPKPLWTKAAFTELAARATKE
LGPTTQAGVNRVEKVLAAAHEVQVALPDKPSPAQADAVADIRSQLDRLLPKGFVTIAGIA
RLNDLARYVTAIARRLERLPQALSADRDRMARVHAVEDAYDELFQALSPGRAAAPDVRDI
AWQIEELRVSLWAQQLGTPRPVSEQRIYKAIDAVAR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaaccgtcagtcgccgagctgcgctcccgcctcgacggcttgaccatccgcgac
gcggaccggctgcgccggcggctgcggaatctccgcggcggcgatgcggccaagatcggg
ccgatcgccgaacaaatcgccgctgccgaagccctcgtgctcacccgccgggccgccgtc
cccgatatcacctaccctgacctgccggtcagcgagcatcgcgacgagctggccaaggcc
atcagcgagaaccaggtggtggtggtcgccggtgcgaccggttcgggcaagaccacgcag
ctgcccaagatctgcctggagctgggccgcggtatccgcggaaccatcggccatacccaa
ccccgccggttggcggcgcgtaccgtcgcacagcgcatcgccgacgaactgggcaccccg
ctcggcgacgccgtcggatacacggtccgcttcaccgatcaggccagcgattccacgctg
atcaagctgatgaccgacggcattctgctcgccgagattcagcgggaccgccggctgctg
cgctacgacaccctgatcctcgatgaggcccacgagcgcagcctcaacatcgacttcctg
ctcggctacctgcgtgagctgctgccacgacgcccggacctcaaagtcatcgtcacctcg
gccaccatcgagcccgagcggttcgcggctcacttcgacgacgcgccgatcgtcgaggtg
tcggggcggacgtacccggtcgagatccgttaccggccactggaagtccccgcaccggtc
tcggacgacgaggaccccgacgatcccgaccacgagatcgtccgtaccgaggttcgtgac
cccaccgaagcgatcgtcgacgccgtccgtgagctggagtccgaaccgccgggtgacgtg
ctggtgttcctgtcgggtgagcgcgaaatccgagacactgcggaagctttgaaggaccta
cggaacaccgaggtgcttccgctgtatgcccgattgcccaccgccgaacagcagaaggtg
ttccagcccagccatagcggtcggcgaatcgtgttggccaccaacgtggccgagacttcg
ctgaccgtgcccggcattcgctacgtcgtcgacccgggcactgcgcggatctcccggtac
agccgtcgcaccaaggtgcagcggttgccgatcgagccgatctcgcaagcctcggccgcc
cagcgcgccggtcggtccggccgtaccgcacccggtgtgtgcatccggctgtactcggaa
aaggacttcgaatcccgtccccgctacaccgatcccgagatcctgcggaccaacttggcc
gccgtcatcctgcagatggccgccctgcagctcggtgacatcgccgagtttccattcctc
gatccgcccgacccccgcagcatccgcgacggtgtgcagctgctgcaggaactcggcgcg
ttcgacgcatccggagccctgaccgacgtcgggcgtcggctggcccggcttccgctcgac
ccgcgggtcggccggatgatcctgcaggccgacaccgagggctgcgtccgggaggtgctg
gtgctcgcggccgccctgtcgattcccgatcctcgcgaacggccgaccgacaaggaggag
gcggcgcggcagaagcatgcccgatttgcggatgagtcctcggatttcgtgtcctacctc
aatctgtggaactacttgcgcgagcagcggaaccagcgctccggcaacgccttccgccgg
atgtgccgggaggagttcctgcactacctgcgaatcagggagtggcaggacctgacgggg
cagctgcgcagcatcgcccgcgatatcggcatccgagagagcgacgagccggccgagccc
gccagcatccacgccgcgctcaccgcgggtctgttgtctcacgtcggtctacgggagggc
gacggccgcgactatcaaggcgcccgcaactcgaagttcgtgctggcgccgggttcggtg
ctgacccgcaagccgccacgctggatcgtggtggccgatctggtcgagaccagccggctg
ttcggccgcatcgccgcgcgggtcgaacccgaggcgatcgagcgcgttgccggccatctg
gtgcaacgcacctacagcgagccgcactgggaggccaggcgcggtgaagtggtggcgttc
gagcgggtgacgctgtacggattgccgttggtgccgcgccgcaaggtcggctacgccaag
atcgagccggagctgagccgcgaattgttcatccgccatgcactcgtggaaggcgattgg
cagacccgccaccacttcttccgcgacaacgccaggctgcgcgccgaactcgaggagatc
gaggaacgcgcacggcggcgcgacctgctggtcggtgatgacgagatctatgcgctgtac
gacacgcgcatcccggccgacatcgtgtccgcgcgacatttcgatgcttggtggaagaag
cagcggcacaagacacccgacctgctgaccttcacccgcgacgacttgctgcagtccgag
gacggtgcggacaatcccgacacctggcagaccggcgatctcgaactgccgctgacctac
cgcttcgagcccggagccgccgatgacggcgtgaccgtgcacgtcccggtcggcgtgctg
gcccgcctgggcggcgacggcttcgcctggcaggttccggcgttgcgggaggagttggtc
accgcgctgatcaaatcactgccgaaggacctgcgccgcaatttcgtcccggccccggat
accgccagggccatcctgggtgacatcgatccgtccgccggctcactgctggacgaggta
caacgcgaactccggaggcgcagcggcattctggtgccgatcgacgcattcgatctgagc
aagatcccggaccatctacggatgaccttcgccgtcgagaacgccgacggaaaagaggtg
gcccgcggcaaggacatcgacgcgctgcgcgaacagctggccgtacccgtcgcgcaagcg
gtggccgatgcgctgggcggtgatctggaacgtaccgggctgcgggcctggcccgaggac
ctcgacgagctgccgcgcaccgtggaaaacgtcagcggcgggcacaccgtgcgcggatac
ccggccttcgtcgacaccgggaaagccgtggacatcaaggtgttcgccaatccggccgat
caggccgcggcaatgaggccgggactgcgccggctgctgcggctgaccgtagcgtcaccg
gtcaagacgatcgagcgggggctgagcacgcggacccgactggccctcaacgccaatccg
gacggcacactggtcgcactgctcgacgattgtgccgacgcggccgctgacgtgctggtc
ccgaagccgctgtggacgaaggcggcattcaccgagttggcagcgcgcgccaccaaggaa
ctcggccccaccactcaagccggagtgaaccgggtcgagaaggtgctggccgccgcgcac
gaggtacaggtggcgctgcccgacaaaccgtcgcccgcgcaggccgatgccgtcgccgac
atccgatctcaactggatcgcctgttgcccaaggggtttgtgaccatcgccgggatcgcg
cggttgaacgatctggcccggtatgtcaccgcgatcgcccgccggctggagcggttgcct
caggcactgagtgccgaccgggaccggatggcgcgcgtgcatgccgtcgaggacgcctat
gacgaactgttccaggcgctctcaccgggccgagccgctgcgcctgacgtccgggacatc
gcgtggcagatcgaggagttgcgggtcagcctgtgggcccagcagctcggcacgccgcgg
ccggtcagcgagcagcgcatctacaaggccatcgacgccgtcgccagatag
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