Manduca sexta (tobacco hornworm): 115448034
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Entry
115448034 CDS
T07401
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03015
mRNA surveillance pathway
msex03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115448034
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115448034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msex03019
]
115448034
Messenger RNA biogenesis [BR:
msex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
115448034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
115448034
NCBI-ProteinID:
XP_037303638
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All DBs
Position
7:4596016..4610017
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AA seq
716 aa
AA seq
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MADGGVDIDLYADDIESDFNRQEEFGGENVDLYDDVIAAPSAKPEDGEGPPNAVVAPHPH
PPEETNGNASYHGPNHGHHGRRYQLYIGNLTWWATDQDIANAVADVGVTDFQDVKFFENR
ANGQSKGFCVISLGSDQSVRMTLDRLPKKEIHGQHPVVTMPTKQALNQFESQSKTRSTPP
GPNNPGMRGPHPGGLPGPHPGGPFPGAEFFGGGPNGPGPNGPRMMMAGPVPHQMRGPPPH
HAPHHLPQHQPPPHHMQHQPPPHQGPPPHRPPMQFQGPPAMQRAGAPGPGGPGGPRAADW
GARPPHPMPPQPAPQYGVPHHQMPHQMTPPHAPPGQGMPPHHQLPPHQQGPPRGPAPMPQ
HPGVGGGAPAPHVNPAFFSQQPPGQPAPALQPPPQPGPPGPGAPYGHPPHGAPPPAQGPP
PGARPPYGRPPQNYPVGAEAGRAPHHGAPLGSGPPHVAHAAHAPHAQHAPHAPHAPHAPI
VPHPAISEAEFEEVMSRNRTVSSSAIARAVSDAAAGEYASAIETLVTAISLIKQSKVAHD
DRCKILISSLQDTLHGVETKSYSSGERSRRSRSRDREARAHHRAPRRRERSASRYRDRSR
DRDDRDRYRERSRERDRERDRDAYYRDYRERERDRSRSRERERADHYNRGHSREERPRKS
PVEPAAESGAGDASNAKSRTAAAPYYDEQRYRERRDRDPPPGDRDRDRDHRRDARH
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaggtgtggatatagatttgtatgctgatgatatagaatctgattttaat
cgccaggaagagtttggtggtgagaatgtggatttatatgacgacgtgatcgccgcgccg
tctgccaagcccgaggatggcgagggacctccgaacgcggtagttgcaccacatccgcac
cccccggaggagacgaacggcaacgcatcatatcacggaccaaatcatggacatcatggc
cgccgctaccaactttacatcggcaaccttacatggtgggcgacggaccaagacattgca
aacgctgtcgccgacgtcggggtgaccgactttcaagatgtgaagttcttcgagaatagg
gccaatggacagtcgaagggattctgcgttatatccctcggctcagaccaatctgttagg
atgaccctggatcgtctgcccaagaaagaaattcacggacaacaccccgttgttacgatg
ccaactaaacaggccctcaaccagtttgaaagtcaatcgaagactagatcaacaccgccg
ggccctaacaatcccggtatgagaggaccacatccgggaggccttcctggaccccatcct
ggaggtccgttcccgggcgcggagttcttcggcggagggccgaacggtcccgggccgaac
gggccgcgcatgatgatggcgggcccggtgccgcaccagatgcgcggcccgccgccgcac
cacgcgccgcaccacctgccgcagcaccagccgccgccgcaccacatgcagcaccagccg
ccgccgcaccagggaccgccgccgcaccggccgcctatgcagttccaaggtccgccggcg
atgcagcgcgcgggggcgccgggcccgggcgggccgggcgggccgcgcgccgctgactgg
ggcgcgcgcccgccgcaccccatgccgccgcagcccgcgccgcagtacggcgtgccgcac
caccagatgccgcaccagatgacgccgccgcatgcgcctccagggcagggtatgcctcca
caccaccaactacctcctcatcaacagggacctcctagagggcctgcaccaatgccgcaa
cacccaggagtgggaggtggcgcccctgcacctcacgtgaatccggctttcttcagccag
cagccaccaggccagccggcacctgctttgcagccgccgcctcaacctggaccaccaggt
ccaggagcaccttacggtcatccgccacacggagccccaccaccggcacaaggaccaccg
ccaggggctaggccaccgtatggccgaccgccacagaactacccagtgggtgcggaggct
ggtcgtgcgccgcaccacggcgcgccgctgggctcgggcccgccgcacgtggcgcacgcc
gcgcatgcgccgcacgcacagcacgcgccgcacgccccgcacgcaccgcacgcgcccatc
gtgccgcaccccgccattagcgaggccgagttcgaggaggtcatgagccgcaaccgcacc
gtctccagcagcgccatcgcgcgcgctgtcagcgacgccgccgccggagagtacgcctcc
gcaatcgagactctcgtcactgccatttcgcttatcaaacagagcaaggtggcacacgat
gatcgctgcaagatcttgatctcgtcgctacaagacacgctgcacggcgtggagacgaag
tcatacagtagcggtgaacggtcgcggcgttcccgatcgcgcgaccgcgaggcgcgtgct
caccaccgcgcgccgcgccgccgcgaacgctccgccagcaggtaccgcgaccgctcgcgc
gacagggacgacagagacaggtatagagaaaggtcgagagaacgcgatcgtgaacgcgac
cgtgatgcgtattacagggactaccgtgaacgcgaacgcgacaggtctcgctcccgggag
cgcgaacgtgccgaccactacaacagaggacacagccgcgaggagaggccgcggaaatca
cctgtagagccagcggcggagagcggcgccggtgacgcgtcgaacgcgaagagtcgtacc
gcggccgcaccctactacgacgagcagagataccgcgagcggcgcgaccgcgacccgccg
cccggcgaccgcgaccgcgaccgcgaccaccgccgcgacgcgcgacactag
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