Microbacterium schleiferi: IT882_10940
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Entry
IT882_10940 CDS
T07058
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msf
Microbacterium schleiferi
Pathway
msf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IT882_10940 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msf03400
]
IT882_10940 (mfd)
Enzymes [BR:
msf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IT882_10940 (mfd)
DNA repair and recombination proteins [BR:
msf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IT882_10940 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPE03791
UniProt:
A0A7S8RG35
LinkDB
All DBs
Position
complement(2257470..2261099)
Genome browser
AA seq
1209 aa
AA seq
DB search
MAFPGISRALDRSEHFRDAVAAAPVDADISVVDGLDAPLLSALVRRRRDSGKPPVLLVIA
PTGRRVESLMPALSALLPEAAVLPFPAWETLPHERLSPSPETVGRRLETLARIASSSGPA
PVIVVASVRAALQPLAAGLADVEPVRLRAGERGHDLGVIVERLVELAYHRVDMVSRRGEF
AVRGGILDVFPTVADHPYRIEFFGDEVDQIRTFSVADQRSLPGAVDHVELLPGRELLLTA
DVRSRARQLAGEFAGLQGMLEKMAEGIPAEGMESLTPALVPHMASLIDYLPEQSAVALVD
PERCRTRARTLAETNHEFLEAAWSAATAGASTPVDLAGGDFLTIAQLRDAVHDRAGIWWT
LSPFDSGASDAAAEGLLADDLDDVLGEAPVRIPARSVPSFHGNVDGATAYVGDLVAAGWS
VVVTASGTGLVERASDVLAEREIAAALVDDADAAPEPGRVWLAVAQLERGFELEDARLAV
LTESEFYGRTIGGDSRVVKKLASRRRNVVDPLQLTPGDHVVHATHGIGRFVELAKREVSS
GGRNPVKSVREYVVLEYAPAKRGYPGDKLMVPTDQLDLLSRYVGGEAPTLSKMGGSDWAQ
AKGRARKAVRDIAVELVKLYSARMAAKGYAFGPDTPWQRELEEAFPFAETMDQLQTIDEI
KADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTER
FAGFPVKVKALSRFQTDKEARETLAGLTDGTVDMVIGTHRILTEKVIFKDLGLMIIDEEQ
RFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILTYVGA
RNDKQIAAAIRRELLREGQVFYVHNRVSSIQRIASELAELVPEARVVVAHGQMGEHQLEQ
VVDDFWERKADVLVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRGRERAYA
YFLYDDAKPLSETAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGF
DLYLRMIGEAVATFRGEDVEGPAELRLELPVQARIPEDYIDSERLRLEAYQKLSAAASAT
AGDDAIDAVIEELTDRYGEPPTDVAGLLSMARLRRRAARAGLTDVVAMGPNLRIAPARLE
DSMRVRLQRLYPAAKLLAGGEAVVVPLPRAGGEQLADADLIAWVDTLLGQLWPEPAPVAP
DSAVPAAQD
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
gtggcttttcccgggatctcgcgcgccctcgaccgctccgagcatttccgggacgcggtc
gcggccgcgccggtggatgccgatatctcggtggtcgacgggcttgatgcgccgctgctg
agcgcgctcgttcgtcgacgtcgcgactccggcaagccgccggtgctgctggtgatcgcc
ccgaccggtcgtcgcgtcgagtccctcatgccagccctgagtgcgctgcttcccgaggcc
gcggtgctgcccttcccggcctgggagactctgcctcacgaacgtctcagcccgagtccc
gagaccgtggggcgacggctggagacgctcgcgcgcatcgcgtcctcgtccggacccgcg
ccggtgatcgtcgtcgcctctgtacgcgccgcgctgcagccgctggccgcggggctcgcg
gacgtcgaaccggtgcggctgcgcgcgggcgagcgcggccacgatctcggagtgatcgtc
gagcggctcgtcgagctcgcttaccaccgggttgacatggtctcgcggcgcggggagttc
gcggtgcgcggcggcatcctggacgtgtttccgaccgttgccgaccacccgtatcgcatc
gagttcttcggcgatgaggtcgaccagatccgcaccttctcggtcgccgatcagcgctcc
ctgcccggtgccgtcgatcacgtggagctccttcccggccgtgagctgctgctgaccgcc
gacgtccgcagtcgtgctcggcagttggctggcgagttcgcgggcttgcaggggatgctc
gagaagatggccgagggtatcccggccgagggcatggagtccctgaccccggcactcgtg
ccgcacatggcttccctcatcgactacttgcccgagcagtcagcggtggctctcgtcgat
cccgagcgctgccggacgcgcgcgcgcaccctcgccgagaccaatcatgagttcctggaa
gccgcgtggagtgcggcgacggctggggcgagcacaccggtcgatttggctggcggcgac
ttcttgacgatcgcccagctgcgtgatgctgtgcacgaccgcgccggcatctggtggacg
ctcagtccttttgactcgggagcctcggatgcggcagccgaggggctgctcgccgacgac
ctcgatgacgtgctgggcgaggcccccgtgcgtattcctgcgcgatcggtgccgtcgttt
cacggcaacgtcgacggggcgacagcctatgtcggcgacctcgtcgccgccggctggagc
gtcgtggtcaccgcatccgggacgggcctggtcgaacgtgccagcgatgtgctcgccgaa
cgcgagatcgcggcggcgctggtcgacgacgcggatgctgcacccgagccgggacgcgtc
tggctcgcggtcgcgcagctcgagcgcggattcgaactcgaagacgcgcgcctggcggtg
ctcacggagtcagagttctatggccgcaccatcggcggcgacagccgtgtcgtcaagaag
ctcgcgtcgcggcgccgcaacgtcgtcgacccgctgcaattgacgcccggcgaccacgtc
gtgcatgccacccacgggatcgggcgatttgtcgagctcgcgaagcgcgaggtgtcgtcg
ggtggccgcaaccccgtcaagagcgtgcgggaatacgtcgtgctcgagtacgcgccagcc
aagcggggataccccggcgacaagctcatggtgcccaccgatcagctcgacctcctgtcg
cgttacgtcggcggtgaggctcccaccctctcgaagatgggcggcagtgactgggcgcag
gcgaagggtcgcgcccgcaaggcggtgcgcgatatcgccgtcgagctcgtgaagctctac
tcggcgcggatggcggcgaaggggtacgcgttcgggccggacacgccgtggcagcgcgag
ctcgaagaggcgttcccgtttgccgagacgatggaccagctgcagacgatcgacgagatc
aaggccgatatggagcggccaatcccgatggaccgtctgctgtcgggggatgtcgggttc
ggcaagaccgaggtcgccgtgcgggccgcgttcaaggcgatccaagacggcaagcaggtt
gcgatgctcgtgccgacgacgctgctggtcaagcagcacctcgagacgttcacggagcgc
tttgccgggttcccggtcaaggtcaaggcgctctcgcgcttccagaccgacaaggaggcg
cgggagactcttgccggtctcaccgacggcaccgtcgacatggtgatcggcacccaccgg
atcctcaccgagaaggtcatcttcaaggacctcggcctcatgatcatcgatgaggagcag
cgcttcggggttgagcacaaggatgccctgaagaagctcaagaccaatgtcgacatcctg
gcgatgagcgcgaccccgattcctcggacgctcgagatggctgtgaccggcatccgggag
atgtcgactctgcagacaccgcccgaagaccggcacccgatcctcacgtacgtcggcgct
cgcaacgacaagcagatcgctgcggcgatccgccgggagttgctgcgggaaggtcaggtc
ttctacgtccacaatcgggtcagttcgatccagcggatcgcgagcgagctcgccgaactt
gtgccggaagcgcgggtcgtggttgctcacggtcagatgggcgaacaccagctcgagcag
gtcgtcgacgacttctgggagcgcaaggccgatgtgctcgtctcgacgacgatcatcgag
acgggcctggacatcgccaacgcgaacaccatcatcatcgaccgtgccgacaagtacggt
ctgtcgcagctgcaccagcttcgcggccgtgtggggcgtggtcgtgagcgcgcgtatgcc
tatttcctctacgacgatgcgaagccgctctcggagacggcagccgaccggctcgagacg
atcgccgtcaacaacgatctcggcagcgggatgcaggtggccctgaaggacctcgagctc
cgcggtgccggaaacctgctgggcgccgagcaagctggccacatcgccggggtggggttc
gacctctacctgcggatgatcggcgaggccgtcgcgacgttccgcggcgaggatgtcgag
gggccagccgagttgcggctcgagctcccggtccaggcccggatccccgaggactacatc
gacagcgagcggctccggctcgaggcctaccagaagctttctgccgcggcatccgcgacg
gcgggggatgacgcgatcgacgcggtcatcgaggaactcaccgaccggtacggcgagccg
cccacggacgttgcggggctcctgtcgatggctcggctgcggcggcgtgccgcgcgcgcc
ggcctcacggatgtcgtcgcgatgggtccgaacctgcggatcgcgccggcccgactcgag
gattcgatgcgcgtccgtctgcagcggctgtatcccgcagcgaaacttctcgccggcggc
gaggcggtcgtcgtgccgttgccgcgggcgggcggtgagcagctagccgatgccgacctc
atcgcctgggtcgacacgctcctcgggcagctgtggccggagccggcacccgtcgcccct
gactcggcagtcccggcagcccaggactag
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