Mycolicibacterium smegmatis INHR2: LI98_27555
Help
Entry
LI98_27555 CDS
T03432
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msh
Mycolicibacterium smegmatis INHR2
Pathway
msh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LI98_27555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msh03400
]
LI98_27555
Enzymes [BR:
msh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LI98_27555
DNA repair and recombination proteins [BR:
msh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LI98_27555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
DUF6052
Motif
Other DBs
NCBI-ProteinID:
AIU23837
UniProt:
A0A653F9L4
LinkDB
All DBs
Position
complement(5656907..5659174)
Genome browser
AA seq
755 aa
AA seq
DB search
MERYERVRLTNPDKVLYPATGTTKAEVFDYYLSIAQVMVPHIAGRPVTRKRWPNGVAEEA
FFEKQLASSAPSWLERGSITHKSGTTTYPIINTREGLAWVAQQASLEVHVPQWRFEDGDQ
GPATRIVFDLDPGEGVTMTQLCEIAHEVRALMTDLDLETYPLTSGSKGLHLYVPLAEPIS
SRGASVLARRVAQQLEQAMPKLVTATMTKSLRAGKVFLDWSQNNAAKTTIAPYSLRGRDH
PTVAAPRTWDEIADPELRHLRFDEVLDRLDEYGDLLAPLDADAPIADKLTTYRSMRDASK
TPEPVPKEIPKTGNNDKFVIQEHHARRLHYDLRLERDGVLVSFAVPKNLPETTAENRLAV
HTEDHPIEYLAFHGSIPKGEYGAGDMVIWDSGSYETEKFRVPEELDNPDDSHGEIIVTLH
GEKVDGRYALIQTKGKNWLAHRMKDQKNARPEDFAPMLATEGSVAKYKAKQWAFEGKWDG
YRVIIDADHGQLQIRSRTGREVTGEYPQFKALAADLAEHHVVLDGEAVALDESGVPSFGQ
MQNRARSTRVEFWAFDILWLDGRSLLRAKYSDRRKILEALADGGGLIVPDQLPGDGPEAM
EHVRKKRFEGVVAKKWDSTYQPGRRSSSWIKDKIWNTQEVVIGGWRQGEGGRSSGIGALV
LGIPGPEGLQFVGRVGTGFTEKELSKLKDMLKPLHTDESPFNAPLPKVDARGVTFVRPEL
VGEVRYSERTSDGRLRQPSWRGLRPDKTPDEVVWE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctatgagcgggttcgcctgacgaatcctgacaaggtgctctatcccgccacg
ggcaccaccaaggcagaggttttcgactactacctcagcatcgcgcaggtgatggtgccg
cacatcgccgggcggccggtgacgcgcaaacgctggcccaacggcgtcgcggaagaggcg
ttcttcgagaagcagttggcgtcgtcggccccgagctggctggaacgtggctcgatcacg
cacaaatcgggcaccacgacgtacccgatcatcaacacgcgtgagggtctggcgtgggtc
gcgcagcaggcctcgctggaagtgcatgtgccgcaatggcgcttcgaggacggggatcag
ggtccggccacgcggatcgtgttcgacctcgatccgggcgaaggcgtcacgatgacgcaa
ttgtgcgagatcgcccacgaggtgcgcgcgctgatgaccgacctcgatctcgagacgtac
ccgctcaccagcggcagcaagggcctgcacctgtatgtgccactggccgagccgatcagc
tcccgcggcgcgtcggtgctcgcgcgccgggttgcccagcagctggagcaggccatgccg
aagctggtcaccgccaccatgaccaagagcctgcgggctggcaaggtgttcctggattgg
agccaaaacaacgcggccaagactacgatcgcgccgtactcgctgcgggggcgcgaccat
ccgacggtcgccgcgccgcgtacgtgggacgagatcgccgatccggaactgcggcatctg
cggttcgacgaggtactggaccggctcgacgaatacggtgatctactggcaccgctcgac
gccgacgcaccgatcgccgacaagctcacgacctaccgcagcatgcgcgacgcgtcgaag
acgcccgagccggtgccgaaagagattccgaagaccggtaacaacgacaagttcgtcatc
caggagcaccacgcccggcggctgcactatgacctgcgactcgagcgtgacggtgttctc
gtgagcttcgcggtgcccaagaacctgcccgagaccaccgcggagaaccggctcgcggtg
cacaccgaggaccaccccatcgagtacctggcgtttcacggctcgattcccaagggcgag
tacggcgccggtgacatggtgatctgggattcgggtagctacgagaccgagaagttccgt
gtgcccgaggaactcgacaaccctgacgacagtcacggcgagatcatcgtcacgctgcac
ggcgagaaggtcgacggcaggtatgcgttgatccagaccaagggcaagaactggctcgcg
caccgcatgaaggaccagaagaacgcgcggccagaggatttcgcgcccatgctggccacc
gagggttccgtcgcgaagtacaaggccaagcagtgggcgttcgagggcaaatgggacggc
taccgcgtgatcatcgacgccgatcacggccagttgcagatacgttcgcgcaccggtcgt
gaggtgaccggtgagtacccccaattcaaggcgctggcagccgatctcgccgaacatcat
gtggtgctcgacggcgaggcggtcgcgttggacgagtcaggtgtgcccagtttcggccag
atgcagaaccgtgcccgctccacgcgggtcgagttctgggccttcgacatcctgtggctc
gacggccggtcgctgttgcgggccaagtactccgaccggcgcaagatcctggaagcgctg
gccgacggtggcggactgatcgtcccggaccagttgcccggcgacgggcccgaggccatg
gagcacgtgcgcaagaaacgcttcgagggtgtcgtcgccaagaaatgggactcgacgtat
caaccaggtcgacggtcgtcatcgtggatcaaggacaagatctggaacacccaggaggtc
gtgatcggcggttggcgtcagggtgagggtggacggtccagcggtatcggcgcactcgtg
ctcggcattccggggcccgaaggcctgcagttcgtgggacgcgtcggaacggggttcacc
gagaaagaactgagcaagctcaaggacatgctgaagccgctgcacaccgacgagtccccc
ttcaacgcgccactgcccaaggtcgacgcccgcggcgtcaccttcgtgcgcccggaactg
gtgggggaggtgcgctacagcgagcgcacatcggacggccggttgcgtcaaccgagttgg
cgtgggctgcgccccgacaagacacccgatgaggttgtgtgggaatag
DBGET
integrated database retrieval system