KEGG   Methanosarcina siciliae C2J: MSSAC_3087
Entry
MSSAC_3087        CDS       T03863                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msj  Methanosarcina siciliae C2J
Pathway
msj03030  DNA replication
msj03410  Base excision repair
msj03420  Nucleotide excision repair
msj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSSAC_3087
   03410 Base excision repair
    MSSAC_3087
   03420 Nucleotide excision repair
    MSSAC_3087
   03430 Mismatch repair
    MSSAC_3087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msj03032]
    MSSAC_3087
   03400 DNA repair and recombination proteins [BR:msj03400]
    MSSAC_3087
Enzymes [BR:msj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSSAC_3087
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSSAC_3087
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSSAC_3087
DNA replication proteins [BR:msj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSSAC_3087
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSSAC_3087
DNA repair and recombination proteins [BR:msj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSSAC_3087
   NER (nucleotide excision repair)
    Other NER factors
     MSSAC_3087
   MMR (mismatch excision repair)
    Other MMR factors
     MSSAC_3087
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKB37677
UniProt: A0A0E3PPJ3
LinkDB
Position
complement(3820392..3822098)
AA seq 568 aa
MTSFREFAEICQAIEKISSTIETTNKVADLLKNVDVEELPLATHFIMSEVFPAWSGKQLG
IGTSLLYSSLSKASGMSIRSIESLIRTTGDIGETALLILKEKRKNQVTFSSFLEEQPELS
ITEVYQRFKTASEASGKGSQELKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVR
DAIARAFSVPADKVEHAFMVTNDLGIVAAAAKKDGIEALESLGIEINRPIKMMLSQISPD
IDADIREMKEAAIEWKFDGARVQIHKSGNSVTLFSRKLENVTNSLPDLVGIVRKHVKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLDGKTLIDLP
LVERRKALESCVESSVEDSKSISVDEQVITGDLELVEKIYREALNAGHEGVMVKNPNSTY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGYGRRANLIGSYSVACYDPETMRFMQVGKVGT
GLTDEQLKELTEMLSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKAPEEADTIQRIGRVYGQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagcttcagggaatttgcagaaatctgccaggcgattgaaaagatatcgagcact
atagaaactacaaataaggttgccgaccttctcaaaaatgtcgacgtggaagaactgcct
cttgcaactcattttataatgagtgaggtttttcctgcctggagtggaaagcaactcggg
atcggcacaagcctgctgtatagttctctctccaaagcctccggaatgtctataagaagt
atagaatctcttatccggaccacaggagacataggggaaaccgcacttcttattttaaag
gagaaaaggaaaaatcaggtgacattttcttctttcctcgaggagcagccggaactttcg
ataactgaggtttaccagcggttcaaaacagcttcggaagcctctgggaaaggttctcag
gaactcaaaataaaaaaccttcagttcctctttaattcctcaactccaagggaagcaaag
tacatttccaggcttgcccttgaggaacttcgaattggggtaggagaaggcgttgtccgg
gatgcgattgccagagccttttccgtccctgcggataaggtagaacatgccttcatggtc
acaaatgatctggggatagttgctgcagctgccaagaaagacgggatagaagcccttgag
agtctggggatcgagataaatcgccccataaaaatgatgctctctcagatcagccctgat
atagatgccgatataagggaaatgaaggaagctgcaattgagtggaaattcgatggggca
agggttcagatccataagagcggaaattcggttactcttttttcccggaagcttgaaaac
gtcacaaattccctccctgaccttgtcggaatagtccggaaacatgtaaaagccgagtcc
gcaattcttgacggggaagccgtagctgtggatgaaaacggaaaacccagggcttttcag
gagatcctcaagcgttttcggcgcaagtacgatgtagaggaaaaagcgctcggaattcct
atccagctcaacctctttgacattatgtacctggacggaaaaaccctgatcgatctcccc
cttgttgaacggcgaaaagctcttgaatcctgtgtggagagctcggttgaagactcaaag
tccatctccgtggacgagcaggtgataaccggagaccttgagcttgtggaaaagatctac
agggaagccttgaatgccggacatgaaggtgtcatggtcaaaaacccgaactcgacatat
tccccaggcaaacgcggcaaaaactggctgaagaaaaagcctcttatggaaacccttgac
cttgtggttgtgggagcagaatggggctacgggcgcagggcaaacctgataggttcatat
tcggttgcctgctatgaccctgagaccatgcgcttcatgcaggttggcaaggttggcaca
gggcttaccgatgagcagttgaaggaactcacggaaatgctctccggcctgatggaaggc
ggagaagccggaggagtctttgcaataaggccgaaggttgttctggaaatcgcttttgag
gaaatacagaaaagccccaactacgattcgggctttgccctgcgttttccccgttttatc
cgtatccgggacgataaagcccccgaagaagccgataccatccagcggattgggcgcgtc
tacggccagcagctgaaaagactttaa

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