Methylocella silvestris: Msil_3103
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Entry
Msil_3103 CDS
T00802
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msl
Methylocella silvestris
Pathway
msl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Msil_3103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msl03400
]
Msil_3103
Enzymes [BR:
msl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Msil_3103
DNA repair and recombination proteins [BR:
msl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Msil_3103
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ACK52012
UniProt:
B8EKY4
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All DBs
Position
3407813..3408823
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AA seq
336 aa
AA seq
DB search
MAKSPPAKPRSISCKTDVVADGLRSRPLVSADPTVPQLFDAPLPGWIAPCLPTLVPKPPA
GEEWVHEIKWDGYRVSAYVEPGAVTIRTRNGYDWTARFPTIAAALGKLKVRSLVIDGEAS
VLDEKGRSSFAELQADLATGGAQRAVLYAFDLLFLDGEDWRQRPLDERRGALAGLIKKKP
PLLLSQEYAGTGVDFFKVACEHELEGIVSKRLDKPYRSGRSKDWLKTKCVQSGEFVVIGY
QPSSGAVRAPLANIKVARWEEGALRYAGAVGTGFSERVARMLRDRLDGLRTPRCAIPRLK
VGGAVWTKPDLIVEIDYRGLTADGELRHASFRGIAE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtccccgccagcaaagccgcgctcgatcagctgcaagacagatgtcgtcgcg
gatgggttgaggagtcggccgcttgtctcggctgatccgacagtcccccagctcttcgat
gcgccgctgccgggctggatcgcgccctgtttgccgacgctcgtccccaagccgccggcc
ggcgaagaatgggttcacgaaatcaaatgggacggctatcgggtttcagcttacgtcgag
ccaggcgccgtcacgatccgcacgcgcaacggctatgattggacggcgagatttccgacg
atcgccgctgcgctcggcaagctgaaggtgcggtcgctggttatcgacggcgaggcgagc
gtgctcgacgagaaaggccgttcgagcttcgccgagctgcaagccgaccttgcaacgggc
ggcgcgcaacgagccgtgctttacgccttcgatctgcttttcctcgatggggaagactgg
cgccagcggccgctagacgagcggcgcggggccttggccggcctgatcaagaaaaagccg
ccgctgcttctcagccaggaatatgccggaactggcgtcgattttttcaaggtcgcttgc
gagcatgagctcgaagggatcgtctcgaagcgcctcgacaagccttaccgatccggccgc
agcaaggattggctgaagaccaaatgcgtgcagagcggggaatttgtcgtgatcggctat
cagccctcgtccggcgcggtccgggcgcccctggccaatatcaaggtcgcgcgatgggaa
gaaggcgcgctgcgctacgcgggagcagtgggaacaggcttcagcgagcgcgtcgccagg
atgctgcgcgacaggcttgacggcctcaggacgccgcgctgtgcgatcccaaggctcaag
gttgggggcgcagtttggacgaagcccgatctcatcgttgagattgattatcgcggcctc
actgcggacggcgagcttcgccatgcgagctttcgcgggatcgcagaatga
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