KEGG   Mycobacterium smegmatis MC2 155: MSMEG_2277Help
Entry
MSMEG_2277        CDS       T00434                                 

Gene name
ligB
Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msm  Mycobacterium smegmatis MC2 155
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:msm00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    MSMEG_2277 (ligB)
   03410 Base excision repair
    MSMEG_2277 (ligB)
   03420 Nucleotide excision repair
    MSMEG_2277 (ligB)
   03430 Mismatch repair
    MSMEG_2277 (ligB)
Enzymes [BR:msm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSMEG_2277 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSMEG_2277 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSMEG_2277 (ligB)
DNA replication proteins [BR:msm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MSMEG_2277 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MSMEG_2277 (ligB)
DNA repair and recombination proteins [BR:msm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSMEG_2277 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     MSMEG_2277 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     MSMEG_2277 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(2358993..2360522)
Genome map
AA seq 509 aa AA seqDB search
MLADVAAASTEVAASSARLVKIERIATLLARSAAEDDTQAVAVIVSWLSGELPQRQIGVG
WAALRTLPPPAATPSLTVDDVDDRLSTIKAVAGKGSQATRAGLVHELFSAATDPEQKFLR
HLLSGELRQGALAGVMADAVAKAAGLPAAEIRRAAMLAGNLPAVAAAAVTGGRAALADFR
LRVGRPVGPMLAQTATSVDDALQRLGGTAVLEAKLDGARVQIHRSGCDVSIYTRSLDDVT
HRLPEVVEATLALPATELIADAEAIALRPDGRPHLFQVTAARFGRKDPGDLGPLSVFFFD
LLHVDGRDLLDLPTEERFGALDALVRQDQRVDRLVTTDTVAAQEFLERTLAAGHEGVMAK
SPHAAYEAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRQGKLSNIHLGARDPDSSGFVML
GKTFKGMTDAMLEWQTQRFLELADGPTDGYVVHLRPEQVVEIAFDGVQRSSRYPAGMALR
FVRVLRYRDDKSPAEADTVETVRRFYERD
NT seq 1530 nt NT seq  +upstreamnt  +downstreamnt
ttgctcgccgacgtcgccgccgcatccaccgaagtcgcggcctcctcggcacgcctggtc
aagatcgaacgcatcgcgacgctgctcgcccgctcggcagccgaggatgacacccaagcg
gtcgcggtgatcgtgtcctggctctccggggaactcccgcagcgtcagatcggtgtcggc
tgggcggcgttgcgcacgttgccgccgccggccgccacaccctccctcaccgtcgacgac
gtcgacgaccggttgagcaccatcaaggccgtcgccggaaaaggttcgcaggccacccgc
gccggtctggttcacgagctgttcagtgcggcaaccgatccagagcagaaattcctgcgt
cacctgctcagcggtgaactgcgccaaggcgcactcgccggggtgatggccgacgccgtc
gccaaggccgcaggccttcccgcagccgagatacgccgtgccgcaatgctcgcgggcaac
ctgcccgcggtcgcagccgccgccgtcaccggcgggcgtgccgcgctggccgacttccgg
ctccgggtgggccggcccgtggggccgatgctcgcgcaaacggccaccagcgtggacgac
gcactccaacgcctcggcggcacagcggttctggaagccaaactggacggcgcccgcgtg
cagatccaccgtagcggctgtgacgtctcgatctacacgcgcagcctcgacgacgtcacg
caccgccttcccgaggtggtcgaggcgacgctcgcgctccccgccaccgagttgatcgcc
gacgccgaggccatcgccctgcgccccgatggcagaccacatctcttccaggtcaccgcc
gctcggttcggacgcaaggatccgggcgatctgggtccgctgtcggtgttcttcttcgac
ctgctgcatgtcgacggccgcgatctgctcgatctgcccaccgaggaacggttcggcgcg
ctcgacgcgctggtgcggcaggatcagcgtgtggaccgtctcgtgacgacggatactgtt
gcggcgcaggagttcttggagcgcaccctggcggccggacacgaaggggtcatggcgaag
tcaccgcacgctgcgtacgaggccggccggcgcggcgcgggatggctcaaggtcaagccc
gtccacacgctcgatctcgtcgtgctcgcggtcgagtggggttcgggacgccgccagggc
aagctgtcgaacatccatctgggggcgcgggatccggattccagcgggttcgtcatgttg
ggcaagacgttcaagggcatgaccgacgcgatgctcgaatggcagacccagcggttcctc
gaattggccgacgggcccaccgacggatacgtcgtgcacctgcgccccgagcaggtcgtc
gagatcgcgttcgacggtgtgcagcgatcgtcacgctacccggccggcatggcgttgcgg
ttcgtgcgcgttctgcgctaccgcgacgacaagtccccggccgaggccgacacggtcgag
acggtgcgtcggttctacgagcgcgactga

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