Mycolicibacterium smegmatis MC2 155: MSMEG_5570
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Entry
MSMEG_5570 CDS
T00434
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msm
Mycolicibacterium smegmatis MC2 155
Pathway
msm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSMEG_5570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msm03400
]
MSMEG_5570
Enzymes [BR:
msm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSMEG_5570
DNA repair and recombination proteins [BR:
msm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSMEG_5570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
DUF6052
Motif
Other DBs
NCBI-ProteinID:
ABK75957
UniProt:
A0R3R7
LinkDB
All DBs
Position
complement(5656824..5659091)
Genome browser
AA seq
755 aa
AA seq
DB search
MERYERVRLTNPDKVLYPATGTTKAEVFDYYLSIAQVMVPHIAGRPVTRKRWPNGVAEEA
FFEKQLASSAPSWLERGSITHKSGTTTYPIINTREGLAWVAQQASLEVHVPQWRFEDGDQ
GPATRIVFDLDPGEGVTMTQLCEIAHEVRALMTDLDLETYPLTSGSKGLHLYVPLAEPIS
SRGASVLARRVAQQLEQAMPKLVTATMTKSLRAGKVFLDWSQNNAAKTTIAPYSLRGRDH
PTVAAPRTWDEIADPELRHLRFDEVLDRLDEYGDLLAPLDADAPIADKLTTYRSMRDASK
TPEPVPKEIPKTGNNDKFVIQEHHARRLHYDLRLERDGVLVSFAVPKNLPETTAENRLAV
HTEDHPIEYLAFHGSIPKGEYGAGDMVIWDSGSYETEKFRVPEELDNPDDSHGEIIVTLH
GEKVDGRYALIQTKGKNWLAHRMKDQKNARPEDFAPMLATEGSVAKYKAKQWAFEGKWDG
YRVIIDADHGQLQIRSRTGREVTGEYPQFKALAADLAEHHVVLDGEAVALDESGVPSFGQ
MQNRARSTRVEFWAFDILWLDGRSLLRAKYSDRRKILEALADGGGLIVPDQLPGDGPEAM
EHVRKKRFEGVVAKKWDSTYQPGRRSSSWIKDKIWNTQEVVIGGWRQGEGGRSSGIGALV
LGIPGPEGLQFVGRVGTGFTEKELSKLKDMLKPLHTDESPFNAPLPKVDARGVTFVRPEL
VGEVRYSERTSDGRLRQPSWRGLRPDKTPDEVVWE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctatgagcgggttcgcctgacgaatcctgacaaggtgctctatcccgccacg
ggcaccaccaaggcagaggttttcgactactacctcagcatcgcgcaggtgatggtgccg
cacatcgccgggcggccggtgacgcgcaaacgctggcccaacggcgtcgcggaagaggcg
ttcttcgagaagcagttggcgtcgtcggccccgagctggctggaacgtggctcgatcacg
cacaaatcgggcaccacgacgtacccgatcatcaacacgcgtgagggtctggcgtgggtc
gcgcagcaggcctcgctggaagtgcatgtgccgcaatggcgcttcgaggacggggatcag
ggtccggccacgcggatcgtgttcgacctcgatccgggcgaaggcgtcacgatgacgcaa
ttgtgcgagatcgcccacgaggtgcgcgcgctgatgaccgacctcgatctcgagacgtac
ccgctcaccagcggcagcaagggcctgcacctgtatgtgccactggccgagccgatcagc
tcccgcggcgcgtcggtgctcgcgcgccgggttgcccagcagctggagcaggccatgccg
aagctggtcaccgccaccatgaccaagagcctgcgggctggcaaggtgttcctggattgg
agccaaaacaacgcggccaagactacgatcgcgccgtactcgctgcgggggcgcgaccat
ccgacggtcgccgcgccgcgtacgtgggacgagatcgccgatccggaactgcggcatctg
cggttcgacgaggtactggaccggctcgacgaatacggtgatctactggcaccgctcgac
gccgacgcaccgatcgccgacaagctcacgacctaccgcagcatgcgcgacgcgtcgaag
acgcccgagccggtgccgaaagagattccgaagaccggtaacaacgacaagttcgtcatc
caggagcaccacgcccggcggctgcactatgacctgcgactcgagcgtgacggtgttctc
gtgagcttcgcggtgcccaagaacctgcccgagaccaccgcggagaaccggctcgcggtg
cacaccgaggaccaccccatcgagtacctggcgtttcacggctcgattcccaagggcgag
tacggcgccggtgacatggtgatctgggattcgggtagctacgagaccgagaagttccgt
gtgcccgaggaactcgacaaccctgacgacagtcacggcgagatcatcgtcacgctgcac
ggcgagaaggtcgacggcaggtatgcgttgatccagaccaagggcaagaactggctcgcg
caccgcatgaaggaccagaagaacgcgcggccagaggatttcgcgcccatgctggccacc
gagggttccgtcgcgaagtacaaggccaagcagtgggcgttcgagggcaaatgggacggc
taccgcgtgatcatcgacgccgatcacggccagttgcagatacgttcgcgcaccggtcgt
gaggtgaccggtgagtacccccaattcaaggcgctggcagccgatctcgccgaacatcat
gtggtgctcgacggcgaggcggtcgcgttggacgagtcaggtgtgcccagtttcggccag
atgcagaaccgtgcccgctccacgcgggtcgagttctgggccttcgacatcctgtggctc
gacggccggtcgctgttgcgggccaagtactccgaccggcgcaagatcctggaagcgctg
gccgacggtggcggactgatcgtcccggaccagttgcccggcgacgggcccgaggccatg
gagcacgtgcgcaagaaacgcttcgagggtgtcgtcgccaagaaatgggactcgacgtat
caaccaggtcgacggtcgtcatcgtggatcaaggacaagatctggaacacccaggaggtc
gtgatcggcggttggcgtcagggtgagggtggacggtccagcggtatcggcgcactcgtg
ctcggcattccggggcccgaaggcctgcagttcgtgggacgcgtcggaacggggttcacc
gagaaagaactgagcaagctcaaggacatgctgaagccgctgcacaccgacgagtccccc
ttcaacgcgccactgcccaaggtcgacgcccgcggcgtcaccttcgtgcgcccggaactg
gtgggggaggtgcgctacagcgagcgcacatcggacggccggttgcgtcaaccgagttgg
cgtgggctgcgccccgacaagacacccgatgaggttgtgtgggaatag
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