Mycolicibacterium gilvum Spyr1: Mspyr1_55390
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Entry
Mspyr1_55390 CDS
T01376
Name
(GenBank) DNA polymerase LigD-like ligase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msp
Mycolicibacterium gilvum Spyr1
Pathway
msp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mspyr1_55390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msp03400
]
Mspyr1_55390
Enzymes [BR:
msp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mspyr1_55390
DNA repair and recombination proteins [BR:
msp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mspyr1_55390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADU02037
UniProt:
E6TPR8
LinkDB
All DBs
Position
pMSPYR101:185636..186622
Genome browser
AA seq
328 aa
AA seq
DB search
MTRASLAPDRLVAPAPMLATLGPAPRGGQFAVEVKFDGQRGILTVDRRVRVTSRNGADIT
ETFPELSAVAAAVGGRRMVLDGEIVAVDEHGRPSFRRLQRRWPQQRRPGAQLVREVPTRF
LAFDVMNIEGEDITHWPYRERRELLDTLMVMESSPALTVPRHWTDVAPADMLAICADQHH
EGIVCKRLDSPYRSGRSRDWIKVPVRATTEAVIVGAFAGPRGEVGALILAAHDEAGRLVL
LGQVGTGFSGAERRRLATLLAGTEAPAPPVAEGASMSGVQWFKPRYVGEVAYREYHAGKG
LRHASWKGLRTAPVSAVCLPRDTGAAPG
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgcgcatcgttggcccccgaccgcctcgtggcccctgcgcccatgttggcgacg
ctgggaccggccccgcgcggcggtcagtttgctgtagaggtgaagtttgatggccagcgg
ggaatattgactgttgatcgccgcgtgcgggtgacgtctcgcaatggggcggacatcact
gaaaccttccccgagttgtccgccgttgcggctgcggtcggtggccgtcggatggtcctt
gacggtgagatcgtcgccgtcgacgagcacggccgcccgtcgtttagacggcttcagcgg
cggtggcctcagcagcgtcggcccggcgcgcagctcgtgcgtgaggttcccacgcgtttt
ctagccttcgatgtgatgaacatcgagggcgaagacatcacgcactggccttaccgggag
cgccgcgagctgttggacacactgatggtgatggagagttcgccagcactgaccgtgccc
cgccactggaccgatgtcgctcctgccgacatgctcgctatctgcgctgatcagcaccac
gagggcatcgtgtgtaagcgactggattcgccataccggtcgggccgatcccgggactgg
atcaaagttccagtgcgcgcgacaaccgaggcggtgatcgtgggggcgttcgccggccct
cgcggtgaggttggggccctgatcctggccgcccacgacgaggcgggccgcctcgtgctg
ctgggtcaggtgggcacgggttttagcggtgccgaacgtcgccgcctggccacactgttg
gccgggaccgaggcccccgcgccgccggtggcagagggggcgtcgatgtcgggggtccag
tggttcaagccgcggtatgtcggtgaagttgcctaccgcgagtatcacgcgggcaaaggc
ctgcgccacgcgtcgtggaagggactccgtactgcgcccgtgtcggcggtgtgtttgccg
cgcgataccggcgcggcgcccggctga
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