KEGG   Methanosarcina siciliae T4/M: MSSIT_2768
Entry
MSSIT_2768        CDS       T03865                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msw  Methanosarcina siciliae T4/M
Pathway
msw03030  DNA replication
msw03410  Base excision repair
msw03420  Nucleotide excision repair
msw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSSIT_2768
   03410 Base excision repair
    MSSIT_2768
   03420 Nucleotide excision repair
    MSSIT_2768
   03430 Mismatch repair
    MSSIT_2768
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msw03032]
    MSSIT_2768
   03400 DNA repair and recombination proteins [BR:msw03400]
    MSSIT_2768
Enzymes [BR:msw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSSIT_2768
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSSIT_2768
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSSIT_2768
DNA replication proteins [BR:msw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSSIT_2768
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSSIT_2768
DNA repair and recombination proteins [BR:msw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSSIT_2768
   NER (nucleotide excision repair)
    Other NER factors
     MSSIT_2768
   MMR (mismatch excision repair)
    Other MMR factors
     MSSIT_2768
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKB29487
UniProt: A0A0E3P6Q9
LinkDB
Position
complement(3518690..3520396)
AA seq 568 aa
MTSFREFAEICQAIEKISSTIETTNKVADLLKNVDVEELPLATHFIMSEVFPAWSGKQLG
IGTSLLYSSLSKASGMSIRSIESLIRTTGDIGETALLILKEKRKNQVTFSSFLEEQPELS
ITEVYQRFKTASEASGKGSQELKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVR
DAIARAFSVPADKVEHAFMVTNDLGIVAAAAKKDGIEALESLGIEINRPIKMMLSQISPD
IDADIREMKEAAIEWKFDGARVQIHKSGNSVTLFSRKLENVTNSLPDLVGIVRKHVKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LVERRKALESCVESSVEDSKSISVDEQVITGDLELVEKIYREALNAGHEGVMVKNPNSTY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGYGRRANLIGSYSVACYDPETMRFMQVGKVGT
GLTDEQLKELTEMLSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKAPEEADTIQRIGRVYGQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagcttcagggaatttgcagaaatctgccaggcgattgaaaagatatcgagcact
atagaaactacaaataaggttgccgaccttctcaaaaatgtcgacgtggaagaactgcct
cttgcaactcattttataatgagtgaggtttttcctgcctggagtggaaagcaactcggg
atcggcacaagcctgctgtatagttctctctccaaagcctccggaatgtctataagaagt
atagaatctcttatccggaccacaggagacataggggaaaccgcacttcttattttaaag
gagaaaaggaaaaatcaggtgacattttcttctttcctcgaggagcagccggaactttcg
ataactgaggtttaccagcggttcaaaacagcttcggaagcctctgggaaaggttctcag
gaactcaaaataaaaaaccttcagttcctctttaattcctcaactccaagggaagcaaag
tacatttccaggcttgcccttgaggaacttcgaattggggtaggagaaggcgttgtccgg
gatgcgattgccagagccttttccgtccctgcggataaggtagaacatgccttcatggtc
acaaatgatctggggatagttgctgcagctgccaagaaagacgggatagaagcccttgag
agtctggggatcgagataaatcgccccataaaaatgatgctctctcagatcagccctgat
atagatgccgatataagggaaatgaaggaagctgcaattgagtggaaattcgatggggca
agggttcagatccataagagcggaaattcggttactcttttttcccggaagcttgaaaac
gtcacaaattccctccctgaccttgtcggaatagtccggaaacatgtaaaagccgagtcc
gcaattcttgacggggaagccgtagctgtggatgaaaacggaaaacccagggcttttcag
gagatcctcaagcgttttcggcgcaagtacgatgtagaggaaaaagcgctcggaattcct
atccagctcaacctctttgacattatgtacctgaacggaaaaaccctgatcgatctcccc
cttgttgaacggcgaaaagctcttgaatcctgtgtggagagctcggttgaagactcaaag
tccatctccgtggacgagcaggtgataaccggagaccttgagcttgtggaaaagatctac
agggaagccttgaatgccggacatgaaggtgtcatggtcaaaaacccgaactcgacatat
tccccaggcaaacgtggcaaaaactggctgaagaaaaaacctcttatggaaacccttgac
cttgtggttgtgggagcagaatggggctacgggcgcagggcaaacctgataggttcatat
tcggttgcctgctatgaccctgagaccatgcgcttcatgcaggttggcaaggttggcaca
gggcttaccgatgagcagttgaaggaactcacggaaatgctctccggcctgatggaaggc
ggagaagccggaggagtctttgcaataaggccgaaggttgttctggaaatcgcttttgag
gaaatccagaaaagccccaactacgattcgggctttgccctgcgttttccccgttttatc
cgtatccgggacgataaagcccccgaagaagccgataccatccagcggattgggcgcgtc
tacggccagcagctgaaaagactttaa

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