Methanosarcina siciliae HI350: MSSIH_1338
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Entry
MSSIH_1338 CDS
T03864
Name
(GenBank) DNA double-strand break repair Rad50 ATPase
Organism
msz
Methanosarcina siciliae HI350
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_27
AAA_23
SMC_N
GAS
AAA_15
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AKB32028
UniProt:
A0A0E3PE19
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Position
complement(1660644..1664519)
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AA seq
1291 aa
AA seq
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MKIDAIHIDGFGKFSRLSVEDLPSGMVILTGANEAGKSTLFTFIRRMFFGIPNTRCNLYP
PLEGGQHGGRLVVIDSEEERWVIERNTSRKDDVKVVLPDGNTGSKTELLKLLGHADRNVF
ENIYAFGLEELQSFETLNDRSINSKLYSAGTGVGVSIPELVKSINNMESDLYKPRGRKPL
INELLRKIRKNSEEIAEFEESQKKYDTLHFELEQRTLEIDQLKEKSRNIRKKLNHIQNLL
SVWDDWRALQESKTDLGTLPGLGSFPEKGEEKLERLLEKIEGIRENVSRLEQELDINAVN
ERSLSPDESLLGQKDAVLELESGLGKYRSEVKALPSLEAKLKQEEAGLSELLLELGPDWD
EEALDRFDRSIPARENVIRMRRAVEEIEAKIKETQNELNQVLTGIERVLQEKDVFEESLL
VHRDQVIELGNGIEKYRADKDSLLSETREVRARKAELEENLSGLGKGWDETTLARFERST
PSKETVPGKRREMEEAEKTIERCRDRLELALGEIEEVRGEIEALEEKLGAYSRLPDPEEV
KQGLEAVSYLRVKQPLLREKESELKNLEKDLEKEEMLFAAFRPRETEHEEGLPLWPAGML
LLAGGIGLAYEYINDALLPGLGIFFLLFATSAIYFLKARKKPSSQPSSPPAGEEHLKGTE
ARKQKAQDSKEKLSGEIAVLTADMKKRARKCGFEDIPDPSVREQKADELQRVLLDLKTAG
ELRQGKDKLRKKLDKLDAAYKELEGKLKAGEERQEEVRQEWKEWLLSSGLDPELSPEHVL
DLLSAIKACLEKQKNIKELEKQVKFREAAVKKYEEEALGVLEACERPVSGIAFDSEIAKL
REDVSFAFNQAERMRTLELESESLEHKKEELEARLLEERTQRDALSEKWTGWLGTYGLDP
SLSVESVLEIFSIIGRCFDRQRTIRNLEEQIASGKTSIEAYEAKVSGVLQECERPFSGLS
FDTQVEKLRSDLEEASEEARSLQQLKTRSKELEIELQAAREKSEAAEKELAALLESGSAS
TEEKFRENARHWAQRTELENRVREAEQQIRRVSGDGEKYELFVEELQASDPLGLEEENRK
LEECLETLEQETSEIMDRRGAIGNQIEQLEHGSEGSLARVMQESLLEDLHEKSRKWASLV
LAQKVLARAIEVYEKERQPAVIVEAQSFFSKITGGRYTRIYSPLNSSEIYVEDREGRQKS
VQELSRGTAEQLYLSLRFGFIREFGRHSESLPIVFDDVLVNFDPERCKSTCEAIKDLVPG
NQLFYFTCHPETVEMLAGRFPDARVVDLDAV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgatgccattcatatcgacggatttggcaagttttccaggttatcggtggaa
gacctgccttccggcatggtcatattaacaggagcaaatgaggcaggaaaatcaacatta
ttcacttttatccggaggatgttttttggcatccccaacacaaggtgcaacctctatccc
ccacttgaaggagggcagcatgggggaagacttgttgtaatcgattccgaagaggagcgc
tgggtaatagaaaggaacacaagccgaaaagacgatgtaaaagtcgtgcttcccgatggg
aataccgggagcaaaactgaacttcttaaactcctgggccatgcagacaggaacgttttt
gaaaacatctatgctttcggccttgaagagctgcagagttttgagaccctgaacgaccgg
agcatcaacagcaaactctacagtgcaggcacaggggtcggagtttccattccggaactt
gtgaagtccatcaacaacatggaaagcgacctgtataaacccaggggcaggaaacccctt
attaatgagctactaaggaaaatcaggaagaacagtgaagaaattgccgaatttgaagag
tcccagaaaaaatacgatacccttcatttcgaacttgaacagagaaccctggaaattgat
cagttaaaagaaaagtcccggaacatacggaaaaaattaaaccacatccagaacctgctt
tccgtctgggacgactggagagccctgcaggagtcaaaaactgaccttggaactttgccc
gggcttgggagtttccctgaaaaaggggaagaaaagcttgaaaggctcctggaaaaaatt
gaggggataagagagaacgtttcacggctggagcaggaactggatataaatgccgttaac
gaacggagcctttctccggacgaaagcctgctcggacagaaagatgcggtgctggaactg
gaaagcgggcttgggaagtacaggtccgaagtaaaagcgctcccttccctggaagcaaag
ctcaagcaggaagaagccgggctttccgagctcctcctggaactgggtccggactgggat
gaagaggctctggaccgctttgaccgttccatccctgcaagggaaaacgtcatccgaatg
cgaagggcagtagaagaaattgaggctaaaataaaggagactcaaaacgagctcaatcag
gtcctcaccggcatcgagcgggtccttcaggaaaaagacgtctttgaagaaagcctgctg
gtgcacagggaccaggtaatcgaacttggaaacggaatcgagaaataccgggctgataag
gactccctcctttccgaaacccgggaagtccgggccagaaaagccgaactggaggaaaac
ctttcagggcttgggaagggctgggacgaaactactcttgcccgtttcgagcgttcaacc
ccttcaaaggaaaccgtacctggaaagcgaagggaaatggaagaggctgaaaaaacaatc
gagaggtgccgcgacaggctcgaacttgcccttggggaaatcgaagaagtccgcggggaa
atcgaagccctggaagagaaactcggggcatactcaaggcttcccgaccctgaagaggta
aagcaggggcttgaagctgtaagctacctcagggtgaagcagcctctcctcagggaaaag
gaaagtgaactcaaaaacctggaaaaagacctggaaaaagaagagatgctttttgcagcc
ttcaggccccgggaaaccgagcatgaggaagggcttcccctctggcctgctggaatgctc
ctgcttgcaggtggcataggtcttgcctacgagtacataaacgacgccctgctccccgga
cttggcatatttttcctcctttttgctacttctgccatatacttcctgaaagccaggaaa
aagccgtcgagtcagccttcaagtcctcctgccggggaggagcacctgaaaggaaccgaa
gcccggaaacagaaagcacaggactcaaaggaaaagctgtccggagagattgctgtcctg
acagcagacatgaaaaaacgggcaagaaagtgcggctttgaagacatccccgatccctcg
gtacgggagcagaaagccgatgaactgcagagggtcctgcttgatttgaaaactgccggg
gaactgcgccagggaaaggacaagctccggaagaagctggataagttagatgcagcttac
aaggaacttgaaggtaagctgaaagccggagaggaaaggcaggaagaggttcgccaggaa
tggaaagaatggcttctttcttcaggactcgacccggaactttctcccgagcatgtgctt
gacctcctttcagcgatcaaagcctgcctggaaaagcaaaaaaatatcaaagaactggaa
aaacaggtaaagttcagggaagctgctgttaaaaagtacgaagaagaagcccttggcgtt
ctggaagcctgcgaaaggcctgtttcgggaatcgcatttgacagtgaaatagcaaagctc
agggaggacgtaagttttgcatttaaccaggctgaaagaatgaggactcttgaacttgaa
tccgaaagcctcgagcacaaaaaagaagagctcgaagcccggctccttgaggaaagaacg
caaagggacgccctctccgaaaagtggaccggctggcttggaacttacgggcttgatccc
tcgctttccgtggaaagcgtgcttgaaatattttcaataatcggaagatgttttgatagg
cagcggacgatccggaaccttgaggaacagatcgcttccggcaaaacttcgatagaagcc
tatgaagcaaaggtgagcggggtcctgcaggaatgcgaacgtccgttttccggactttct
ttcgatacccaggtcgaaaaactccgttcggaccttgaagaggcatctgaggaggcaagg
agcctgcagcagctgaaaacaagatcaaaggaactcgagatagaacttcaggcagcccgg
gaaaagtctgaagcagctgaaaaagagcttgcagcccttcttgagtccggttccgcatca
acggaagaaaagttccgtgaaaacgcacggcactgggctcagcgaaccgagctcgaaaac
agggtaagggaagccgaacagcagatcaggagggtttccggggacggggaaaagtatgag
cttttcgtagaagaactgcaagcttccgatcccctgggcctggaagaagaaaaccgcaag
ctggaagaatgcctggaaacccttgaacaggaaacctccgagatcatggacaggcgcgga
gcgataggaaaccagattgaacagctcgaacacgggagtgaaggttccctggcaagggta
atgcaggaaagcctgcttgaagaccttcacgaaaagtcaaggaaatgggcatccctggtc
cttgcccaaaaagtccttgccagagccatcgaagtctatgaaaaggaaaggcagcccgca
gtcatcgtggaagcccagtcctttttctcaaagatcaccggaggcaggtacacgcggatt
tattccccgctcaactcttccgaaatctacgttgaagaccgggaaggccgccagaagagc
gtccaggaactcagccggggaacagccgaacagctttatctctctctgcgtttcggtttt
atcagggaattcgggaggcattcggaatctcttcccatcgtatttgatgacgtactggtg
aactttgaccccgaacgctgcaaaagtacctgtgaagccataaaggaccttgtcccgggc
aaccagctcttttatttcacctgccaccccgaaaccgtagagatgcttgcgggaaggttc
ccggacgcccgggttgtagaccttgatgcggtataa
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