Macaca thibetana thibetana (Pere David's macaque): 126939864
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Entry
126939864 CDS
T08579
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
mthb
Macaca thibetana thibetana (Pere David's macaque)
Pathway
mthb04151
PI3K-Akt signaling pathway
mthb04510
Focal adhesion
mthb04512
ECM-receptor interaction
mthb04611
Platelet activation
mthb04820
Cytoskeleton in muscle cells
mthb04926
Relaxin signaling pathway
mthb04933
AGE-RAGE signaling pathway in diabetic complications
mthb04974
Protein digestion and absorption
mthb05146
Amoebiasis
mthb05165
Human papillomavirus infection
mthb05205
Proteoglycans in cancer
mthb05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
mthb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126939864
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126939864
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126939864
09142 Cell motility
04820 Cytoskeleton in muscle cells
126939864
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
126939864
09152 Endocrine system
04926 Relaxin signaling pathway
126939864
09154 Digestive system
04974 Protein digestion and absorption
126939864
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
126939864
09172 Infectious disease: viral
05165 Human papillomavirus infection
126939864
09174 Infectious disease: parasitic
05146 Amoebiasis
126939864
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
126939864
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
126939864
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mthb00536
]
126939864
Glycosaminoglycan binding proteins [BR:
mthb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126939864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
126939864
NCBI-ProteinID:
XP_050621610
LinkDB
All DBs
Position
16:44915755..44933373
Genome browser
AA seq
1498 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQVEGQDEDIPPITCVQNGLRYHDRDVWKPEPCRI
CVCDNGKVLCDDVICDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEVISCPRLLS
LRRPCLLTVLPSLTWPLVSSSPIPQGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGP
PGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPG
EPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG
HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDG
ATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAG
NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG
AKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKG
PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG
PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAG
PAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG
VQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG
DAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGETGPSGPAGPTGARGAPGDRGEPG
PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARG
SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG
PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG
PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGPKGDRGETGPAGPPG
APGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRG
IKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGTPGKDGLNGLPGPIGPPG
PRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHDGGRYYRADDANVVRD
RDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDA
IKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDKRHVWFGESMTDGFQFEYGGEGSDPA
DVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRF
TYSVTVDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGFDVGPVCFL
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggaaggccaagtcgagggccaagacgaagacatcccaccaatcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgagccctgccggatc
tgcgtctgcgacaacggcaaggtgttgtgcgatgacgtgatctgtgacgagaccaagaac
tgccccggcgccgaagtccccgagggcgagtgctgtcccgtctgccccgacggctcagaa
tcacccaccgaccaagaaaccaccggcgtcgaggtaatctcctgccctcgacttttgtcc
ctccgccgcccgtgcctcctcacggtcctcccttctctaacctggcctcttgtttcttct
tccccaatcccacagggacccaagggagacactggcccccgaggcccaaggggacccgca
ggcccccctggccgagatggcatccctggacagcctggacttcccggaccccccggaccc
cccggacctcccggaccccctggcctcggaggaaacttcgctccccagttgtcttatggc
tatgatgagaaatcaaccggaggaatttctgtgcctggtcccatgggtccctctggtccc
cgtggtctccctggcccccctggtgcacctggtcctcaaggcttccaaggtccccctggt
gagcctggcgagcctggagcttcaggtcccatgggtccccgaggtccccctggcccccct
ggaaagaacggagatgatggggaagctggaaaacctggtcgtcctggtgagcgtgggcct
cctgggcctcagggtgctcgaggattgcccggaacagctggcctccctggaatgaaggga
cacagaggtttcagtggtttggatggtgccaagggagatgctggtcctgctggtcccaag
ggtgagcctggcagccctggtgaaaatggagctcctggtcagatgggcccccgtggtctg
cctggtgagagaggtcgccctggagcccctggccctgctggtgctcgcggaaatgatggt
gctactggtgctgccggaccccctggtcctactggccccgctggtcctcctggcttccct
ggtgctgttggtgctaagggcgaagctggtccccaaggtccccgaggctctgaaggtccc
cagggtgtgcgtggtgagcctggcccccctggccctgctggtgctgctggccctgctgga
aaccctggtgctgatggacagcctggcgctaaaggtgccaatggtgctcctggtattgct
ggtgctcctggcttccctggtgcccgaggcccctctggaccccagggccccggcggccct
cccggtcccaagggtaacagcggtgaacctggtgctcctggcagcaaaggagacactggt
gctaagggagaacccggccccgttggtgttcaaggacctcctggccctgctggagaggaa
ggaaagcgaggagctcgaggtgaacccggacccactggcctgcccggaccccctggcgag
cgtggtggacctggtagccgtggtttccctggtgcagatggtgttgctggtcccaagggt
cccgctggtgaacgtggttctcctggccctgctggccccaaaggatctcctggtgaagct
ggtcgtcctggtgaagctggtctgcctggtgccaagggtctgactggaagccctggcagc
cctggtcctgatggcaaaactggcccccctggtcccgccggtcaagatggtcgccccgga
cccccaggcccccctggtgcccgtggtcaggctggtgtgatgggattccctggacctaaa
ggtgctgctggagagcccggcaaggctggagagcgaggtgttcccggaccccctggtgct
gtcggtcctgctggcaaagatggagaggctggagctcagggaccccctggccctgctggt
cccgctggcgagagaggtgaacaaggccctgctggctcccccggcttccagggtctcccc
ggccccgctggtcctcccggtgaagcaggcaaacctggtgaacagggtgttcctggagac
cttggtgcccccggcccctctggagcaagaggcgagagaggattccctggcgagcgtggt
gtgcaaggtccccctggtcctgctggtccccgaggggccaatggtgctcccggcaatgat
ggtgctaagggtgatgctggtgcccctggagctcccggtagccagggcgcccctggcctt
cagggaatgcctggtgaacgtggtgcagctggtcttccagggcctaagggtgacagaggt
gatgctggtcccaaaggtgctgatggctctcctggcaaagatggcgtccgtggtctgact
ggccccattggtcctcctggtcctgctggtgcccctggtgacaagggtgaaactggtccc
agcggccctgctggtcccactggagctcgtggtgcccccggagaccgtggtgagcctggt
ccccccggccctgctggcttcgctggcccccctggtgctgatggccaacccggtgctaaa
ggcgaacctggtgatgctggtgctaaaggcgatgctggtccccctggccctgccggaccc
gctggaccccctggccccattggtaatgttggtgctcctggacccaaaggtgctcgtggc
agcgctggtccccctggtgctactggtttccctggtgctgctggccgagtcggtcctcct
ggcccctctggaaatgctggaccccctggccctcctggtcctgctggcaaagaaggtggc
aaaggtccccgtggtgagactggccctgctggacgtcctggtgaagttggtccccctggt
ccccctggccccgctggcgagaaaggatcccctggtgctgatgggcctgctggtgctcct
ggcactcccgggcctcaaggtattgctggacagcgtggcgtggtcggcctgcctggtcag
agaggagaaagaggcttccctggtcttcctggcccctctggtgaacctggcaaacaaggt
ccctctggagcaagtggcgaacgtggtccccctggtcccatgggcccccctggattggcc
ggaccccctggtgaatctggacgtgagggagctcctggtgccgaaggttcccctggacga
gatggttctcctggccccaagggtgaccgtggtgagactggccccgctggacctcctggt
gctcctggtgctcctggtgcccctggccccgttggccctgctggcaagagtggtgatcgt
ggtgagactggtcctgccggtcccgctggtcctgtcggccctgttggcgcccgtggcccc
gctggaccccaaggcccccgtggtgacaagggtgagacaggcgaacaaggcgacagaggc
ataaagggtcaccgtggcttctctggcctccagggtccccctggccctcctggctctcct
ggcgaacaaggtccctctggagcctctggtcctgctggtccccgaggtccccctggctct
gctggtactcctggcaaagatggactcaacggcctccctggccccattgggccccctggt
cctcgcggtcgcactggtgatgctggtcctgttggtccccctggccctcctggccctccc
ggtccccctggtcctcccagcggtggtttcgacttcagcttcctgccccagccacctcaa
gagaaggctcacgatggcggccgctactaccgggctgatgatgccaatgtggttcgtgac
cgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatcgagaacatccgg
agccccgagggcagccgcaagaaccccgcccgcacctgccgcgacctcaagatgtgccac
tctgactggaagagcggagagtactggattgaccccaaccaaggctgcaacctggatgcc
atcaaagtcttctgcaacatggagactggtgagacctgcgtgtaccccactcagcccagt
gtggcccagaagaactggtacatcagcaagaaccccaaggacaagaggcacgtctggttc
ggcgagagcatgaccgacggattccagttcgagtatggcggcgagggctccgaccctgcc
gacgtggccatccagctgaccttcctgcgcctgatgtccaccgaggcctcccagaacatc
acctaccactgcaagaacagcgtggcctacatggaccagcagactggcaacctcaagaag
gcactgctcctccagggctccaacgagatcgagatccgcgccgagggcaacagtcgcttc
acctacagcgtcactgtcgatggctgcacgagtcacaccggagcctggggcaagacagtg
atcgaatacaaaaccaccaagacctcccgcctgcccatcatcgatgtggcccccttggac
gttggtgccccagaccaggaattcggcttcgacgttggccctgtctgcttcctgtaa
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integrated database retrieval system
