KEGG   Methanosarcina thermophila CHTI-55: MSTHC_0412
Entry
MSTHC_0412        CDS       T03891                                 
Name
(GenBank) Ribonuclease PH
  KO
K11600  exosome complex component RRP41
Organism
mthe  Methanosarcina thermophila CHTI-55
Pathway
mthe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mthe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSTHC_0412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mthe03019]
    MSTHC_0412
Messenger RNA biogenesis [BR:mthe03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSTHC_0412
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MSTHC_0412
SSDB
Motif
Pfam: RNase_PH RNase_PH_C MCM_C
Other DBs
NCBI-ProteinID: AKB14730
UniProt: A0A0E3NGY6
LinkDB
Position
528548..530017
AA seq 489 aa
MSDKPEKLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGKNKILVGVFGPREA
HPRRSQRADNAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMTELFPKTA
IDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEEDNY
GEADFPVAMTQDGDITLLQMDGHLTPEEIKKGLELVKKGCKEILEIQRAVLRKKFETPVE
EPEEETEEAEIEAVEAEPSLEYAPEAAVVEEIIEEAGEFEEELSQETVEACAVDEEASEC
EKLEEIIKEAEAEVIEAEAIEEVIETEIEEEAEEEALEAETEFEAAFEASYEEFAESVVT
GKLCPEKTVSEKAELEPEIEEFAEEKPEIEEKPEIEEKPEIEEKPEIEEKPEIEEKPEIE
EKPEIEEEAGIEKAASEEAFESKPEIEPEAESREKAVEAEEVPVEEECKGPWKVVKDPSE
SGSRGENYE
NT seq 1470 nt   +upstreamnt  +downstreamnt
atgagtgataaacctgaaaaattaatcactgacgatgggctgcgccttgacgggaggcgt
gcggatgaaatcaggcccatgaaaattgaggtcggagtactctctagagccgacggttca
tgttatcttgaatgggggaaaaataaaattctcgtaggtgtattcggcccgagagaagcc
cacccccgccgttcacagcgtgcagataatgcagttatccgttatagatataatatggct
tctttttctgtggaagaccgtgcaagacccggaccaagcagacggagcattgaaatctca
aaagtttccagggaagcttttgaaccggtaattatgacagagctcttcccgaagaccgca
attgatatttttgtggaggtgcttcaggctgatgcgggaacaaggacagcagcaatcaat
gcctcaagcatagctcttgccgatgcaggcattccaatgaagggactgataacttcctgt
gcttttggaaaagttgacgggcagatagtactcgaccttaacaaggaagaggataattat
ggtgaggcggattttcctgttgcaatgactcaggatggagatattaccctgctccagatg
gacggacatctcactcccgaagaaatcaagaaaggtcttgaacttgtaaagaagggctgc
aaagaaattcttgaaattcagcgggcagtcctgagaaagaagtttgaaactcctgtcgag
gagcctgaagaagagaccgaagaggctgaaattgaagctgtggaagctgaaccttctctt
gaatacgctccggaagcagcggttgtagaagaaattattgaggaagccggggagtttgag
gaagagctttcccaggaaacggttgaagcctgtgctgttgatgaagaagcttccgagtgc
gaaaaactcgaagaaatcattaaagaggctgaggctgaagtaatagaagcggaagctata
gaagaagtaattgaaacagaaatcgaagaagaagctgaagaggaagctttagaagctgaa
actgagtttgaagctgcttttgaggcttcttatgaggaatttgccgagtctgtggtgact
ggaaaactttgtcccgaaaaaactgtttctgaaaaagcagaattagagcctgaaatcgag
gaatttgctgaagaaaaacccgagattgaggaaaaacctgagattgaggaaaaacctgag
attgaggaaaaacctgagattgaggaaaaacctgagattgaggaaaaacctgagattgag
gaaaaacctgagattgaggaagaagccgggattgaaaaggctgcttcagaagaagctttt
gaatccaaaccagagatcgagcctgaagctgaatccagggaaaaggcagtagaagccgaa
gaagtgcccgtagaagaggagtgcaaaggaccctggaaggtagtgaaggatccctctgaa
tctggaagcagaggtgaaaactatgagtga

DBGET integrated database retrieval system