Methanosarcina thermophila CHTI-55: MSTHC_0412
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Entry
MSTHC_0412 CDS
T03891
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
mthe
Methanosarcina thermophila CHTI-55
Pathway
mthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSTHC_0412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthe03019
]
MSTHC_0412
Messenger RNA biogenesis [BR:
mthe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSTHC_0412
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSTHC_0412
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
MCM_C
Motif
Other DBs
NCBI-ProteinID:
AKB14730
UniProt:
A0A0E3NGY6
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All DBs
Position
528548..530017
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AA seq
489 aa
AA seq
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MSDKPEKLITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGKNKILVGVFGPREA
HPRRSQRADNAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMTELFPKTA
IDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEEDNY
GEADFPVAMTQDGDITLLQMDGHLTPEEIKKGLELVKKGCKEILEIQRAVLRKKFETPVE
EPEEETEEAEIEAVEAEPSLEYAPEAAVVEEIIEEAGEFEEELSQETVEACAVDEEASEC
EKLEEIIKEAEAEVIEAEAIEEVIETEIEEEAEEEALEAETEFEAAFEASYEEFAESVVT
GKLCPEKTVSEKAELEPEIEEFAEEKPEIEEKPEIEEKPEIEEKPEIEEKPEIEEKPEIE
EKPEIEEEAGIEKAASEEAFESKPEIEPEAESREKAVEAEEVPVEEECKGPWKVVKDPSE
SGSRGENYE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaacctgaaaaattaatcactgacgatgggctgcgccttgacgggaggcgt
gcggatgaaatcaggcccatgaaaattgaggtcggagtactctctagagccgacggttca
tgttatcttgaatgggggaaaaataaaattctcgtaggtgtattcggcccgagagaagcc
cacccccgccgttcacagcgtgcagataatgcagttatccgttatagatataatatggct
tctttttctgtggaagaccgtgcaagacccggaccaagcagacggagcattgaaatctca
aaagtttccagggaagcttttgaaccggtaattatgacagagctcttcccgaagaccgca
attgatatttttgtggaggtgcttcaggctgatgcgggaacaaggacagcagcaatcaat
gcctcaagcatagctcttgccgatgcaggcattccaatgaagggactgataacttcctgt
gcttttggaaaagttgacgggcagatagtactcgaccttaacaaggaagaggataattat
ggtgaggcggattttcctgttgcaatgactcaggatggagatattaccctgctccagatg
gacggacatctcactcccgaagaaatcaagaaaggtcttgaacttgtaaagaagggctgc
aaagaaattcttgaaattcagcgggcagtcctgagaaagaagtttgaaactcctgtcgag
gagcctgaagaagagaccgaagaggctgaaattgaagctgtggaagctgaaccttctctt
gaatacgctccggaagcagcggttgtagaagaaattattgaggaagccggggagtttgag
gaagagctttcccaggaaacggttgaagcctgtgctgttgatgaagaagcttccgagtgc
gaaaaactcgaagaaatcattaaagaggctgaggctgaagtaatagaagcggaagctata
gaagaagtaattgaaacagaaatcgaagaagaagctgaagaggaagctttagaagctgaa
actgagtttgaagctgcttttgaggcttcttatgaggaatttgccgagtctgtggtgact
ggaaaactttgtcccgaaaaaactgtttctgaaaaagcagaattagagcctgaaatcgag
gaatttgctgaagaaaaacccgagattgaggaaaaacctgagattgaggaaaaacctgag
attgaggaaaaacctgagattgaggaaaaacctgagattgaggaaaaacctgagattgag
gaaaaacctgagattgaggaagaagccgggattgaaaaggctgcttcagaagaagctttt
gaatccaaaccagagatcgagcctgaagctgaatccagggaaaaggcagtagaagccgaa
gaagtgcccgtagaagaggagtgcaaaggaccctggaaggtagtgaaggatccctctgaa
tctggaagcagaggtgaaaactatgagtga
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