KEGG   Methanosarcina thermophila TM-1: MSTHT_0950
Entry
MSTHT_0950        CDS       T03892                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mthr  Methanosarcina thermophila TM-1
Pathway
mthr03030  DNA replication
mthr03410  Base excision repair
mthr03420  Nucleotide excision repair
mthr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mthr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSTHT_0950
   03410 Base excision repair
    MSTHT_0950
   03420 Nucleotide excision repair
    MSTHT_0950
   03430 Mismatch repair
    MSTHT_0950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mthr03032]
    MSTHT_0950
   03400 DNA repair and recombination proteins [BR:mthr03400]
    MSTHT_0950
Enzymes [BR:mthr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSTHT_0950
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSTHT_0950
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSTHT_0950
DNA replication proteins [BR:mthr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSTHT_0950
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSTHT_0950
DNA repair and recombination proteins [BR:mthr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSTHT_0950
   NER (nucleotide excision repair)
    Other NER factors
     MSTHT_0950
   MMR (mismatch excision repair)
    Other MMR factors
     MSTHT_0950
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme HAD
Other DBs
NCBI-ProteinID: AKB12708
UniProt: A0A0E3NE21
LinkDB
Position
complement(1179736..1181442)
AA seq 568 aa
MTSFREFSETCQAIEKISSTIDTTNRVADFLKKVDVEELPIATHFIMSEVFPAWSGKQLG
IGISLLYAALSRASGMSVKSIESLLRTTGDIGDTTLLILKEKRKNQVTFSSFFEEQPELS
ITEVYNRFKIASEASGKGSQDIKIKNLQFLFNSSTPREAKYIARLALEELRIGVGEGVVR
DAIAKAFSVPVDVVEHAFMVTNDLGIVAATAKEGGIEALERLGIEINRPIRMMLSQISPD
IAADIREMGEAAIEWKFDGARLQIHKAGDSVTLFSRKLENVTNSLPDLVEIIRKHVKAES
AILDGEAVAVDKNGKPRAFQEILKRFRRKYHVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LIERRKALESCVESSTEDSKSICVAKQVITGDLELIEQIYKEALKAGHEGLMVKNPNSVY
SPGKRGKNWIKKKPLMETLDLVIVGAEWGFGRRANLIGSYTVACYDPETGRFLQVGKVGT
GLTDDQLKELTEMLSDLMEGGEAGGVFAVRPKIVLEIAFEEIQKSPNYNSGFALRFPRFI
RIRDDKDPEEADTIQRIEKVYSQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagcttcagggaattttcagagacctgccaggcgattgagaagatctcaagtact
attgatactacaaatagagttgcggattttcttaaaaaggtcgatgtagaagaactgccc
attgcaactcattttattatgagtgaggtttttcctgcctggagtggaaagcagctggga
atcggaataagcctgctgtatgccgccctttccagagcttcgggaatgtctgtgaaaagc
atagaatctcttctacggactactggagatataggggacacaaccctgcttatccttaag
gaaaagaggaaaaatcaggttactttctcttctttcttcgaagagcagcccgaactctca
ataacggaggtttataaccgtttcaaaatcgcctcagaagcttcggggaaaggctcacag
gatatcaagataaaaaatcttcagtttctcttcaactcctcaacccccagggaagcaaaa
tatatcgccagacttgcccttgaggaactcaggatcggcgtcggtgaaggcgttgtaagg
gacgcgattgcaaaagctttctctgtgcctgtggacgtggtcgagcatgcctttatggtc
acaaacgacctcgggatagttgctgcaactgcaaaggaaggcggaatagaagcccttgaa
cgcctgggaatcgaaatcaatcgcccgattagaatgatgctttcccagatcagtcctgat
atagctgccgacatcagggaaatgggggaggctgcaattgaatggaagtttgatggggca
agactccagatccataaggctggagattcggttacgcttttttcacgcaaactcgaaaat
gttacgaattcccttcccgaccttgtggagataattcgcaagcacgtaaaagctgagtcg
gcaatccttgatggggaagccgtggctgtggacaaaaacggcaagcccagggcatttcag
gaaattctcaagcgtttcaggcgcaagtaccatgtggaagaaaaagccctcggcatccct
attcaactcaacctttttgacatcatgtacttaaacggaaaaaccctgatagacctgcct
ctcattgaaaggagaaaagcgcttgagtcctgtgttgaaagctcaactgaggactcaaaa
tcaatctgcgtagccaaacaggtgataaccggagacctcgaacttatagaacagatctac
aaggaggctttaaaagccgggcatgaaggtcttatggtcaaaaacccgaattcggtctat
tctcctggcaaacgcggcaaaaactggattaagaaaaaacctcttatggaaaccctcgac
cttgtaattgtgggagcggaatggggctttggcaggcgtgcaaaccttataggctcttat
actgttgcctgttatgatccagaaaccggtcgttttctccaggtaggcaaagtgggcacg
ggtctgactgacgatcagctaaaggagctcacagagatgctctctgacctcatggaaggc
ggagaggcaggcggagtatttgcagtacgcccaaaaatcgtccttgagatcgcctttgag
gaaatccagaaaagccccaattataactcaggctttgcattgcgtttcccgcgctttatc
cgcatccgggacgataaagacccggaagaagccgatacaatacagaggatagaaaaggta
tacagccagcagttgaaaaggctgtaa

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