Medicago truncatula (barrel medic): 112420040
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Entry
112420040 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC112420040
Organism
mtr
Medicago truncatula (barrel medic)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RT_RNaseH
RT_RNaseH_2
RVT_1
RVT_3
Retrotrans_gag
Integrase_H2C2
RNase_H
gag-asp_proteas
Asp_protease_2
DUF5712
Motif
Other DBs
NCBI-GeneID:
112420040
NCBI-ProteinID:
XP_039687795
LinkDB
All DBs
Position
3:6878032..6891308
Genome browser
AA seq
2234 aa
AA seq
DB search
MHHTAFIKGVKTKSHTLLISASERSKVARRIQYKPARIHNTRAHIKKRMLAAEQENAQLR
EELVNLKGEMERMSIIMETLMAEREQAAISDSAPVVVVTAAPDGLPRPTPTTATAIGLTQ
PLMTDFSSGNMATMGNSGFRPIGPHGQFSTPQYSMPLGYPWGMPLTASGGFRPSATEMPF
AHGQQTSPPFQTDQLFPHAAMTQAGPSVHVEPQQEEQVYHSDSVMGDDKAVNWEERFGAL
EKEMSNMRGKEAVVQSIYDLCLVPDVDIPPKFKDSLTGPAHTWFMGLKGITTFEQLADAF
MQQYKYKTYLAPSRKELQSLTQKDKESFKEYAQRFIQKASQIRPPLDERELSEMFYETLS
PCYSEKMIVCASQKFTDLVETGIRIEEWTRKGVGASGSSAGSSSSGNKKFGNGYPKRNAQ
EVGMVAHGGSQPVYPNQSYVANITPQMTAPQNPNYQPPRPQGPSLYYPPLYQQPYNPQQL
SQPPYYPQQPYYPQQPYQQRPHYPPQQQPRPQAPYNQQNQKQQFDPIPMTYGALLPSLLA
QNRVHTLPPPRIPDPLPRWYRPELHCVFHQGAAGHDVERCYALKKEVQKLLDSKELTFAD
PDHVAQNNPLPPHGPAVNMIQDCQEDACIIYARDIKTPLVPIHVKMCEMALFSHDHEACH
VCSVNPRGCMQVQEDVQGLLDKKELVVTKEIKSKSVCVVTPVFRDRRPLVINPNSAKPAV
TPLVICVPKPAPPSSQKAVPYKYEGTILEPGNETTSSSVVDNIADSSRILRSGRVLPAVV
QKSTGVSVEETVKERNTGKGRVREHPKEVDYEDADEILKLIKRSEYRVVDQLLQTPAKIS
ILSLLSSSGAHRDALKKVLDQAFVDYDVTLGQFESIVGNVTACNSLSFSDEDLPAEGKKH
NQALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLTYSEALLRPSKVTVRAFDGTRRA
VYGEIDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSHGKL
ITVSGESAFLISNLSAFSVIGGSSSDGSSFQGFSAEGSVSKIGTCMASLKDAQRVIQEGK
TEGCGQLVELPENKRKEGIGFLNSRSGMFDPTEGSFRSAGFIHDSPGINALTDDTPEGVA
PVFVTPGGTCCNWIAVDIPSVIPLSKLNISEPVEHSNPMLPPNFEVPVYEAMIEEDEEIP
DEIKWMLEQERKTIQPHQEEIEIINLGTEEDKKEIKIGALLETSVKERVIELLREYADIF
AWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSNPEMALKIKEEVRKQIDAGFLVTSE
YPQWLANIVLVPKKDGKVRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGF
SGYNQIKMAPEDREKTSFITPWGAFCYLVMPFGLINAGATYQRGMTKIFHDMIHKEIEVY
VDDMIVKSGTEEEHVDQKGIEVDPDKVRAIREMPAPKTEKQVRGFLGRLNYISRFISHMT
ATCGPIFKLLRKDQGVKWNDDCQKAFDRIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMG
CVLGQQDETGKKEHAIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLIS
KMDPIKYIFEKPALTGRIARWQMLLSEYDIMYRTQKAIKGSILADHLAHQPVEDYQPIKF
DFPDEEVMYLKAKDCDEPVFGEGPDPESEWGLIFDGAVNVYGSGIGAVLITPKGTHIPLT
ARIRFDCTNNIAEYEACIMGIEEAIDLRIKKIVIYGDSALVINQIKGEWETRHPGLIPYR
DYARRLLTFFNKVELHHVPRDENQMADALATLSSMIKVNGHNTVPVINVQFLDRPAYVFA
AEAVEDDKPWYHDIQVFLQTQKYPPGISNKDKKTLRKLSSRFFLNGDVLYKRNFDGVLLR
CVNEHEAEELMHEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYA
DKIHIPPSMLNVVSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKPQMNGAVEAA
NKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPS
LRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKRVHPREFKEGD
LVVKCIKSFQPDPRGKWTPNYEGPYVVKRAFSGGFFRKYPRGYVRDRPWEMVDSCQKQSI
LQKLPLEVTKRCTL
NT seq
6705 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatactgcattcataaaaggcgtcaaaaccaagtctcatactctcctcatttct
gcctcagagagaagcaaagtggcccggcgtattcagtacaagcccgctcgcattcacaac
actcgagcccatatcaagaagaggatgttagcggcagaacaggaaaacgctcagcttaga
gaggagctggttaacctcaagggagagatggaaagaatgtcaattataatggaaactttg
atggctgaaagagagcaagcagcaatctccgactcagctcctgttgtggttgtcacagct
gcacctgatggtctcccgcgaccaactcctactactgctacagctatcggcctcacccag
cctttgatgactgatttttcttctggtaatatggcaactatgggtaactcaggcttccgt
cctattggcccccatggtcaattttccactcctcagtattccatgcctctagggtaccca
tggggcatgccacttacagccagtgggggttttcgtccaagtgctactgaaatgcctttc
gctcatggtcaacagacttcaccaccttttcagacggaccagctatttcctcatgctgct
atgactcaagcaggacccagtgtgcatgttgagccacaacaggaagaacaggtctatcat
tctgacagtgtaatgggggacgacaaggcagttaactgggaagagagattcggtgctttg
gaaaaagagatgagtaacatgcgcggtaaagaggctgttgttcagagtatatacgatctt
tgcttggtaccagatgtggatataccccccaaattcaaggacagtttgaccggtcctgca
cacacttggtttatgggtttgaagggcattactacgttcgaacagttggctgacgctttc
atgcaacaatacaaatacaaaacatatctggcgcctagtcgcaaagagttgcaatccttg
acccagaaggataaagagtcattcaaagagtatgcacaacgcttcatccaaaaggcctcc
cagattcgtccgcccttggacgagagagaattatccgagatgttctatgagactttgagc
ccttgttattcagaaaaaatgattgtctgtgcatcacagaagttcactgatctggtagag
acagggatacgtatcgaggagtggactcgtaagggagttggtgcttcaggaagttctgca
ggaagttcatctagtggtaacaagaagtttggtaatggttacccaaagaggaatgctcaa
gaagtcggcatggtggcccatggcggttctcaaccagtgtacccaaaccagtcttatgtt
gccaacatcaccccacaaatgaccgctcctcagaacccaaactatcaaccaccaagacct
caagggccttcattatattatcccccactatatcaacaaccatataacccacaacaactc
tctcaaccaccctactatcctcaacaaccctactaccctcaacaaccataccaacaaagg
ccacactacccaccacaacaacaaccccgtcctcaagctccctacaaccagcaaaatcaa
aaacaacaatttgaccccataccaatgacttatggagcattattgccttccttgctcgcg
caaaaccgagttcacacattaccacctcctcgcattccagatcctctcccacgctggtac
cgccctgaacttcattgtgtttttcatcaaggggcagcgggtcacgatgtggaacgctgt
tatgccctcaagaaagaggtccaaaaattgctcgatagcaaagagttgactttcgccgac
cctgatcatgttgcccagaacaatcctctgccgcctcatgggcctgctgttaatatgatt
caggactgtcaagaagatgcttgcattatctacgcacgcgacatcaagacccctttggta
ccgatacatgtgaaaatgtgcgagatggctctcttcagtcacgatcatgaagcttgtcat
gtatgttcggtgaatcctcgtgggtgcatgcaagtccaagaggatgtgcaagggctccta
gataaaaaggaacttgtggttacaaaggaaatcaagagcaaaagtgtttgtgttgtcacc
ccagtattcagagataggaggccacttgtgataaaccctaacagtgcaaaacccgctgtc
actcctttggtaatctgtgtgcctaagcctgcacctccttcctctcagaaagccgtgcct
tacaagtacgagggcacaattttagaacctggaaatgaaacgacatcatcctctgttgtg
gacaacattgccgatagtagtcggattttaagaagcggccgcgttcttcctgctgtggtt
cagaagagcactggtgtttcggttgaggaaacagtaaaggagcggaacacaggtaaaggt
agagttagagagcatcccaaagaggtcgactatgaggatgctgatgaaatcctaaagctg
atcaagagaagtgaatacagggttgtggaccaattgttacaaacccctgcgaagatttcc
attttgtctctgttatcaagctctggtgctcatcgagatgccctgaagaaagttctcgac
caagcttttgtggattatgatgtgacattgggccagtttgaaagtattgtgggaaatgtg
actgcatgtaacagcctgagtttcagtgatgaagacctcccggcggaggggaaaaagcac
aatcaagctttactcatttccgtactttgcagaacagactccctatccaatgttctgatt
gacaccggctctgctcttaatgtgatgcccaaatcaaccttggatcaactgacgtattcc
gaggctctcttgaggccaagtaaggtgacggtgagggcatttgacgggaccagaagagca
gtatatggtgagatagatttgcccatctcagtcggcccccatgagtttcaggttactttt
caggtcatggaaatccaggcatctttcagctgtttacttggcagaccatggattcatgac
gctggggcagtaacatccactctccaccagaagctgaagtttgtaagtcatggaaagctc
attactgtgagtggcgagtcagcctttttgatcagcaatttgtccgctttctctgtcatt
ggtggtagtagttcagatgggtcgtcattccaagggttctctgctgaaggaagcgtaagt
aagattgggacttgtatggcttcgttgaaggacgcacagagggtaatccaggagggcaaa
accgaaggatgtggtcagctagtggagttaccggaaaacaagcgcaaggaagggattggt
tttcttaacagtaggtctgggatgtttgaccctaccgaaggctcttttcgcagtgccgga
ttcatccatgattcgccagggatcaatgcacttactgatgatacaccggaaggagtggca
cctgtttttgtgacaccaggaggaacttgctgcaactggattgccgtagacattccttct
gtgatacccctttctaaactgaacataagcgagcccgttgaacacagtaaccccatgctt
cctcccaactttgaagtcccggtttacgaggctatgatagaggaggatgaggagattcct
gatgagattaaatggatgttggaacaagaaagaaagacaattcagcctcatcaggaagag
atagaaatcatcaatctgggtactgaggaagacaagaaagaaattaagatcggggcattg
ttggagacatctgttaaggaaagagtaattgagcttctcagagaatatgctgatatattt
gcatggtcatacaaggacatgccgggtctagaccctgatgtcgtggaacacagattgcct
ttgaagcctgaatgtcctccggtaaagcagaaattgagaagatctaatcccgagatggcc
ctcaagatcaaagaggaagtacgcaagcagattgatgcaggtttcctggtcacgtcagag
tatcctcagtggttagccaacatagtgctcgttccaaagaaagatggcaaagttagaatg
tgtgtcgattaccgggatttgaacaaggctagtccgaaggataatttccctttacctcac
attgatgtattggttgataacactgctaaatgcaaggtattctccttcatggacggtttt
tccgggtataatcagataaagatggctccagaagatagagaaaagacgtccttcatcacg
ccttggggtgctttttgttatttggtgatgccatttgggttgataaacgctggtgccact
taccagagaggcatgaccaaaatattccatgacatgattcacaaagaaattgaagtctac
gtagatgatatgattgtcaagtctggcacagaagaagaacatgttgatcaaaagggtatt
gaagttgatcccgacaaggtcagagccatcagagaaatgcctgctccaaagacagagaaa
caagtcagaggttttcttggtagactgaattatatctccagatttatctctcacatgact
gccacatgtggaccaattttcaagttactccgcaaggatcaaggggtgaagtggaatgat
gattgtcagaaagcttttgaccgaatcaaagaatatctgttagaacctccgattcttgtt
cctccagttgacggaagacctttgatcatgtatctaacagtactggaagattccatgggc
tgtgtgttaggtcaacaagatgaaaccggaaagaaagagcatgctatctactatttgagt
aagaagttcactgattgtgagtctcgatattctgtacttgagaaaacttgttgtgctttg
gcctgggccgccaagcgtctccgtcattatatgattaatcatacaacttggttgatatcc
aagatggatccaatcaagtacatatttgagaagccagctttaactggaaggatcgctcgc
tggcaaatgttattgtccgagtatgatatcatgtatcgcacccagaaagcaatcaaaggc
agcatcttggcagaccatttggcccatcaaccggttgaagactaccaaccaatcaagttt
gacttcccagatgaagaggtcatgtatctaaaagcgaaagattgtgatgaaccagtgttc
ggtgaaggtcctgatcctgaatccgaatggggtttgatatttgatggagccgttaatgtc
tatggtagtggaattggtgcagttctcattacccctaagggtactcacatccctcttact
gcaaggattcgatttgattgtacaaataacattgcagaatacgaagcttgcatcatgggt
atcgaagaagccatcgacttgaggatcaagaaaattgtcatctatggagattcagctctc
gtgattaaccagatcaaaggagaatgggaaactcgccatcctggtttgattccctacaga
gattatgcaagacgattgctgactttcttcaacaaagtagagttacaccatgtgccccgt
gatgagaatcaaatggcggatgctttagctactctatcctcaatgatcaaagtgaatggt
cacaatactgtgccggtaatcaatgttcaattcctcgatcggcctgcttatgtgtttgca
gctgaagcagttgaggatgacaaaccatggtatcatgatatccaagtcttccttcagact
caaaaatacccgcctgggatatccaacaaagacaagaagaccttgagaaagttgtcaagc
cgtttcttcctcaacggagatgttttgtataagagaaactttgatggggtcctactcaga
tgtgtgaatgagcatgaagcagaagagttgatgcatgagatacatgaaggctctttcgga
actcactcatgtgggcacgccatggcaaagaagatattgagggctgggtattactggata
acaatgcatgcggattgctacaaccatgccaagagatgtcacaaatgtcagatctatgct
gacaagattcatataccaccatctatgctcaatgtcgtctcttccccgtggcctttctct
atgtggggcattgacatgattggtcggattgaaccaaaagcctccaatgggcatcgcttc
atactagtggccatcgattatttcaccaagccacagatgaatggggcagttgaagctgca
aacaagaacatcaagaagatcatacagaagatggtagttacttacaaggactggcatgaa
atgttaccttatgctttgtatggatatcgtacctcagtgcgaacctcaacaggggcaacc
cctttctctttggtatatggtatggaggctgtactaccagtagaagtggagattccttct
ttaagagtcttgatggaagctgaattgtctgaagcagaatggtgccagagtaggtacgac
cagttgaatttgattgaggagaaacgcatggccgctttgtgtcatggacagctatatcag
tcaaggatgaaacaagctttcgataaaagagtccatcctcgtgaattcaaggaaggagat
cttgtggtcaaatgtatcaaatccttccaacccgatcctaggggcaaatggacgccaaac
tatgaaggtccctacgtggtgaagagggctttctctggtggctttttcagaaaatatccg
aggggttatgtgagggataggccctgggaaatggtagattcctgccaaaagcaaagtatc
ctgcaaaagttaccccttgaggtgacaaagcgctgcacactttag
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