Medicago truncatula (barrel medic): 112420116
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Entry
112420116 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC112420116
Organism
mtr
Medicago truncatula (barrel medic)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH
RVT_3
RT_RNaseH_2
Retrotrans_gag
rve
RNase_H
Integrase_H2C2
gag-asp_proteas
Asp_protease_2
Ty3_capsid
DDE_Tnp_IS240
Motif
Other DBs
NCBI-GeneID:
112420116
NCBI-ProteinID:
XP_024634522
LinkDB
All DBs
Position
3:20140811..20148034
Genome browser
AA seq
2309 aa
AA seq
DB search
MVTAEQENNDLREELSNLKGEMEKMAIMMETMMAEREQAAISEPTPVVVVTVAPEGPPQP
ISINAAAVSLTQPLMTDFSSGNMTNMGNSGFRPFGPHGLFSTPQYSMHPGYPWGMPSATN
EGFRPSSAEMPFALGQQTAPLFQKGQLIPRATMTQAEPTVHVEPHHEEQIYHSDSVMGDD
RAVNWEERFGALEKEMSNMRIKEAVVRNVYDFFLVPDVDIPPKFKMPVFEKYQGDTCPQN
HLTMYVTKMIAYKNNVPLLIHCFQDSLTGPAHTWFMGLKGITTFEQLADAFMQQYKYNTY
LAPSRKELQSLTQKDKESFKEYAQRFIQKASQIRPPLDERELSEMFYETLNPCYSEKMIV
CASQKFTDLVETGIRIEDWARKGTGASGSSSGSSAVSPSNGNKKFGSGYSKKNTQEVGLV
AHGGSQSIYPNHHYIANITPQMTAPHNPNYQPPRPQGPSPYYPPLYQPPYNSQQFPQQPY
YPQQPYQQRPRYPPQQQPRPQAPYNQQNQRQQFDPIPMTYEALLPSLLAQNRVQTIPPPR
IPDPLPRWYRPDLHCVYHQGAPGHDVERCYALKKEVQKLLNSKELTFADPDHVAQDNPLP
PHGPAVNMIQDCQGDACILYACDIKTPLVPIHVKMCEVALFSHDHEACHICSVDPRGCMQ
VQNDVQCLLDRKELVVTRESKSKSVCVVTPVFRAKRPLVINPNSAKPAGTPLVICVPRPA
PPVSQKAVPYKYEDTILGPRSETTSSSVVDNIAESSQILRSGRVLPAVVQKSTSVPVKEP
VKERNTGKDKAWEQPKEVGYEDSDEVLKLIKRSEYRVVDQLLQTPAKISIMSLLSSSGAH
REALRKVLDQAFVDYDVTLGQFESIVGNVTACNSLSFSDEDLPAEGKKHNQALLISVLCK
TDSLSNVLIDTGSALNVMPKSTLDQLTYSEALLRPSKVTVRAFDGTRRSVYGEIDLPISV
GPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSHGKLITVSGESAFLI
SNLSAFSVIGGNSSDGSTFQGFSAEESVGKIETCMASLKDAQRVIQEGKTEGWGQLVELS
ENKHKQGIGFPNSKPGTFDPTRGSFYSAGFIHDSPETDSITEDTPEEVAPVFVTPEGACR
NWIAVDIPSVIPRSKLNINEPVEHSNPMLPPNFEVPVYEALVEEDDEIPDEIKWMLEQER
KTIQPHQEEIEIINLGTEEDKKEIKIGALLEESVKERVVELLREYADIFAWSYKDMPGLD
PDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPV
PKKDGKVRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIKMAPE
DREKTSFITPWGAFCYLVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTE
EEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPV
PKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNVDCQKAFDQIQEYLLE
PPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHAIYYLSKKFTDCESRYSVLEK
TCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRTQ
KAIKGSILADHLAHQPIEDYQPIKFDFPDEEVMYLKAKDCDEPVFGEGPDPESEWGLIFD
GAVNVYGSGIGAVLVTPKGTHIPFTARIRFDCTNNIAEYEACIMGIEEAIDLRIKKIVIY
GDSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSM
IKVNGHNTVPVINVQFLDRPAYVFTAEAVDDDKPWYHDIQVFLQTQKYLHGASNKDKKTL
RKLSSRFFLNENVLYKRNFDGVLLRCVNEHEAGELMHEIHEGSFGTHSCGHAMAKKILRA
GYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKAS
NGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNIISRYGVPNRIITDNGTNLNNNM
MKELCDDFKIQHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYKDWHEMLPYALYGYRT
SVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMA
ALCHGQLYQSRMKQAFDKRVHPREFKEGDLVIKCIKSFQPDPRGKWTPNYEGPYVVKRAF
SGGALILTNMDGEELPRPVNSDAVKKYFV
NT seq
6930 nt
NT seq
+upstream
nt +downstream
nt
atggtaactgctgaacaggagaacaatgatcttagggaggagcttagtaatctcaagggc
gagatggagaagatggcaattatgatggagactatgatggctgagagagagcaagcagca
atctcagaaccgactcctgttgtggtcgtcacagttgcacctgagggtcccccgcaacca
atttctattaacgctgcagctgtcagccttacccagcctctaatgactgatttctcttct
ggtaatatgacaaatatgggcaactcaggcttccgtccttttggtccccacggtctcttc
tctactcctcagtattccatgcatcctggctacccatggggcatgccgtctgcgaccaat
gagggttttcgtccaagttctgctgaaatgccatttgctctcggtcaacagactgcccca
cttttccagaagggtcagctaattcctcgggctactatgactcaagcagaacctactgtg
catgttgagccacatcatgaagaacagatttatcattccgacagtgtgatgggggatgac
agagcagttaattgggaagagaggtttggtgctttagaaaaagagatgagtaacatgcgt
attaaagaagcggtcgtccggaacgtatatgattttttcttggtaccggatgtggatata
cctccaaaattcaagatgcctgtgtttgagaaataccaaggagacacgtgcccacaaaat
catctgactatgtatgttacaaagatgatagcctacaagaacaacgtgcctttgctcatt
cattgcttccaagacagtctgactggtcctgcacatacctggtttatgggattgaagggc
atcactacatttgaacagttggctgatgctttcatgcagcaatacaagtacaacacatat
ctggcacccagtcgcaaagagttgcagtccttgacccaaaaggacaaagaatcattcaaa
gagtatgcacaacgcttcattcagaaggcctcccagatccgtccgcccttggatgagagg
gaattatccgagatgttctacgagaccctgaatccttgctattcagagaaaatgattgtt
tgtgcatcacagaagttcaccgacttggtggagacagggatacgtattgaggattgggct
cgtaagggaacaggtgcttcgggaagttcttcaggtagttctgcggtaagtccgtctaac
ggtaacaagaagtttgggagtggttactcgaagaagaatactcaagaagtcggcttggtg
gcccatggaggatctcagtctatatacccaaatcatcattatattgccaacattacccca
caaatgaccgctccccataacccaaactatcaaccaccaagacctcaagggccttcacca
tactatccaccattatatcaaccaccatacaactcacaacaattccctcaacaaccatat
tacccccaacaaccataccaacaaaggccacgctacccaccacaacaacaaccccgtcct
caagctccctacaatcaacaaaatcaaagacaacagtttgatcccataccaatgacctat
gaagcattacttccttctttgctcgcacaaaaccgggttcaaacaataccgcctcctcgc
attccagaccctctcccacgctggtaccgtcctgaccttcattgtgtctatcatcaaggg
gcaccaggtcatgatgttgaacgttgttatgcccttaagaaagaggtccaaaaattgctc
aatagtaaagagttaactttcgccgaccctgatcatgttgcccaggacaatcctctgcct
ccccatgggcctgctgttaatatgattcaagactgtcagggagatgcttgcattctctac
gcatgtgatatcaagacccctttggtaccgatacatgtaaaaatgtgtgaagtggctctc
ttcagtcacgatcatgaagcttgtcatatatgttcggtggatccccgtggttgcatgcaa
gtccagaatgatgtacaatgtctcctagatagaaaagaactggtagttacaagggaaagc
aagagcaaaagtgtgtgtgttgtcaccccggtcttcagagctaagaggccacttgtgata
aaccctaacagtgcaaagcccgctggcactcctttggtaatctgtgtgcctaggcccgcg
cctcctgtttctcagaaagccgtaccctacaagtatgaagacacgattctaggacccaga
agtgaaactacttcatcctccgtcgtggacaatattgccgaaagtagtcagattttgaga
agcggccgtgtccttcctgctgtggttcaaaaaagcaccagtgttccggtcaaagaacca
gtaaaagaacggaacacaggtaaagataaagcttgggagcagcccaaagaggttggttat
gaggattctgatgaagtcttaaagttgatcaagaggagtgaatacagggttgtggaccaa
ttgttacaaacccctgcaaagatttccataatgtccctgttatcaagctctggtgctcat
cgggaggccctgaggaaagtactagaccaagcttttgtggattatgatgtgactttgggg
cagttcgaaagtatcgtggggaatgtgaccgcttgtaatagtctgagtttcagtgacgaa
gacctcccggcggaggggaaaaagcacaatcaggcattactcatctctgtactttgcaaa
acagactccttgtctaatgttctgatagacaccggctccgctcttaatgtgatgcccaaa
tcaactctcgaccaattgacatattctgaggctctcttaagacccagtaaggtgacggta
agagcatttgatgggaccagaagatcagtatatggggagatagatttgccaatttcggtc
ggcccgcatgagtttcaggtcacttttcaagtcatggagattcaggcttctttcagttgt
ttacttggtagaccatggattcacgacgctggggcagtaacatccactctccaccagaag
ctgaagtttgtaagtcatggaaagctaattactgtgagtggtgagtcagccttcttgatc
agcaatctgtcggcgttctctgttattggtggtaatagttcagatgggtcgacattccaa
ggattctctgccgaagaaagtgtaggtaaaatcgagacttgtatggcttcgttgaaagac
gcccagagggtaatccaggaaggcaaaactgaaggctggggtcagttagtggagttgtcg
gagaacaagcacaagcagggaattggttttcctaacagcaagccggggacgttcgaccct
accagaggctctttctacagtgctggattcatccatgattcgccagagaccgattccatc
acagaagatacacctgaagaagtggcacccgtctttgtgacacctgaaggagcctgccgc
aactggattgctgtagacattccttctgtgataccccgttctaaactgaacataaatgag
cccgttgaacacagtaaccccatgcttcctcccaactttgaggtcccggtttacgaggct
ttggtagaggaggatgatgagattcctgatgagattaaatggatgttggaacaagaaagg
aagacaattcaacctcatcaagaagagatagaaatcattaatctgggtactgaggaagac
aagaaagaaatcaagatcggggcattgttggaggaatctgttaaagaaagagtggttgag
cttctcagagagtatgctgatatatttgcatggtcatacaaggacatgccaggtctagac
cctgatgtggtggaacacagactgcctttgaagcctgagtgtcctccggtaaagcagaaa
ttgagaagatcccatcctgacatggccctcaagattaaagaagaagtgcggaagcaaatc
gatgcaggcttcctggtcacatcggagtatcctcaatggttggccaacatagtgcccgtt
ccgaagaaagatggaaaagtcagaatgtgtgttgattaccgggatttgaacaaagctagt
ccgaaggataatttccctttacctcacattgatgtattggttgataatactgctaaatgc
aaggttttttccttcatggacggtttctccggttataatcagataaagatggctccagaa
gatagggaaaagacgtctttcatcacgccctggggtgctttctgttatttggtgatgcca
tttgggttgataaacgctggtgccacttaccagagaggcatgaccaaaatattccatgac
atgattcataaagaaattgaggtctacgtagatgatatgattgtcaagtctggcacagaa
gaagagcatgttgagtatttattgaagatgtttcagcggttgagaaagtacaagctccgg
ttgaatcctaacaaatgtaccttcggcgtcagatctggtaaactcctgggctttatcgtc
agtcaaaagggtattgaagttgatcccgacaaggtcagagccattagagaaatgcctgtt
ccaaagacagagaagcaagttagaggttttcttggtagactgaactatatctccaggttt
atctctcatatgactgccacatgtggaccaattttcaagttactccgcaaggatcaaggg
gtgaagtggaatgttgattgtcagaaagcttttgaccaaatccaagaatatctgttagaa
ccgccaattcttgttcctccagttgacggaagacctttgatcatgtatttaacagtactg
gaggattccatgggctgtgtgttaggtcaacaagatgaaaccggaaagaaagaacatgct
atctactatttgagtaagaaattcactgattgtgagtcccgatactctgtacttgagaaa
acttgttgtgctttagcctgggctgccaagcgtctccgtcattatatgattaatcataca
acttggttgatatccaagatggacccaatcaagtacatatttgagaagccagctttaacc
ggaaggattgctcgctggcagatgttattatccgagtatgatatcgtgtatcgcacccag
aaagcaatcaaaggtagcatcttggcagaccatttggcccatcaaccaattgaagactat
caaccaatcaagtttgacttcccagatgaagaggtcatgtatctaaaagcgaaagattgt
gatgaaccggtgttcggtgaaggtcctgatcctgaatccgaatggggtttgatatttgat
ggggctgttaatgtctatggtagtggaattggtgcagttctcgttacccctaagggtact
cacatcccttttactgcaaggatacgatttgattgtacaaacaacatcgcagaatatgaa
gcttgcatcatgggtatcgaagaagccatcgacttgaggatcaagaaaattgttatctat
ggagattcagctctcgtgattaaccagatcaaaggagaatgggaaactcggcatcctggg
ttgattccctatagagattatgcaagacgattgctgacttttttcaacaaagtagagtta
caccatgtgccccgtgatgagaatcaaatggcggatgctttagctactctgtcctcaatg
atcaaagtgaatggtcacaatactgtgccagtaatcaatgttcagttcctcgatcggcct
gcttatgtgtttacagccgaagcagttgatgatgacaagccatggtatcatgatatccaa
gtcttccttcaaactcaaaaatacctgcatggggcatccaacaaggacaaaaagaccttg
agaaagttgtcaagccgattcttcctcaacgaaaatgtattgtataagaggaactttgat
ggggttctactcagatgtgtgaatgagcatgaagcgggagagttgatgcacgagatacat
gaaggctctttcggaacgcactcatgtgggcacgccatggcgaaaaagatattgagagct
ggttactactggataacaatgcacgctgattgttacaatcatgccaagaggtgccacaaa
tgtcaaatctatgctgacaagattcatataccaccatctatgctcaacgtcatctcttcc
ccgtggcccttctctatgtggggcattgacatgattggtcggattgaaccaaaagcttcc
aatggacatcgcttcatactagtggctatcgattatttcaccaagtgggtcgaagctgca
tcttatgccaacgtaacaaagcaggtagtggttagatttatcaagaacaacatcatcagc
cgctatggtgttcctaacagaatcatcacagacaatggcacaaatttgaataataatatg
atgaaagagttgtgcgatgacttcaagattcaacatcacaattcctctccttacaggcca
cagatgaatggggcagttgaagctgcaaacaagaacatcaagaagatcatacagaagatg
gtagttacttacaaggactggcatgaaatgttaccctacgctttgtatggatatcgtacc
tcagtgcgaacctcgacaggggcaacccctttctccttggtatatggtatggaggctgta
ctaccggtagaggttgagattccttctttgagagttttgatggaagctgaattgtctgaa
gcagaatggtgtcagagtaggtacgaccagttgaatttgattgaggaaaaacgtatggcc
gctttgtgtcatggacagctatatcagtcaaggatgaaacaagcattcgataaaagagtc
catccccgtgaattcaaggaaggagatcttgtgatcaaatgtatcaaatcctttcaacca
gatcctaggggcaagtggacacctaactatgaaggtccctatgtggtgaagagagctttc
tccggtggtgctttaattcttacaaacatggatggagaagagttacctcgtcctgtgaac
tcggatgcagtcaagaaatactttgtctag
DBGET
integrated database retrieval system
