Medicago truncatula (barrel medic): 112421905
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Entry
112421905 CDS
T01716
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03030
DNA replication
mtr03420
Nucleotide excision repair
mtr03430
Mismatch repair
mtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112421905
03420 Nucleotide excision repair
112421905
03430 Mismatch repair
112421905
03440 Homologous recombination
112421905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mtr03000
]
112421905
03032 DNA replication proteins [BR:
mtr03032
]
112421905
03400 DNA repair and recombination proteins [BR:
mtr03400
]
112421905
Transcription factors [BR:
mtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112421905
DNA replication proteins [BR:
mtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112421905
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112421905
MMR (mismatch excision repair)
112421905
DSBR (double strand breaks repair)
HR (homologous recombination)
112421905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
zf-CCHC
tRNA_anti-codon
zf-CCHC_3
zf-CCHC_2
zf-CCHC_5
DUF936
Motif
Other DBs
NCBI-GeneID:
112421905
NCBI-ProteinID:
XP_024639787
LinkDB
All DBs
Position
5:11148712..11152670
Genome browser
AA seq
904 aa
AA seq
DB search
MAVNLTQGAIVTMCFTSEDLHPVLQVIDLKLVQSQQNSGTERYRVVLSDGLHYQQGMLAT
QKNELVHSGRLQKGSIVKLSQFICNVVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEDPA
QSAVSHAGNVQSAAGHLGSNAGNSQYLNSGSHTGGGVNVRPNVALPSMDRPTVNPPASVV
YSNGSGSARYGASNAPPPYPKPEPGVSLNRPASVNGSSGEQNTSFRNPLCETSRPVQNSY
VRPPQPVNQQPSPMYNRGPTGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRTYTNS
RGQGKVFSFDLLDSDRGEIRATCFNTVAEQFYNVIEVGKVYLVSRGSLKPAQKNFNHLPN
DQEITLDITSVIQPCVDDNSILQQIYNFRPIGDIENMQNNSIVDVIAVVTSISPTASIIR
KNGTETQKRSLQLKDMSGRSVELTVWGSFCNTEGQKLQNICDSGEFPILVVKSARVNDFN
GKSIGTIATSQLLVEPDFPEAFTLRGWFDQEGRNVPSQSISRESSSFGKSEVQKTISQIK
DENLGTSDKPDWISICANVVFFKYDNFYYTACPNMIGDRKCNKKVTDNGDKTWHCERCDT
SLSCDYRYLLQMQIQDHTGMTWVTAFQEGGEDIMGMPAKDLFSVKFEEKDEEKFKEIISK
VVFTKYMFKLKVKEETFNDEARVKSTVVKAEKIVNFASESKSLLDLIDKLKSEKAEGTTI
NSAINTTGPGSLPIGQATPPVYNPINSNTNTGRDYGTPANQVSQYGNQHNSSFASSGAPG
SYMSCSNCGGSDHSSAQCLHLRNPPEQTAGGAYVNTVSGSGGASGKCYKCQQPGHWASNC
PSMSAANRVSGGSGGASGNCYKCNQPGHWANNCPNMSAAPQSHGNSNTGQGRYGIAQNQP
DGRC
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgaatctaactcagggtgcgatagtaacgatgtgtttcacatcggaagatttg
cacccggtgttacaagttatcgatttgaagcttgttcagtcgcagcagaatagtggtact
gagagataccgagtcgttctctccgatggtttgcattatcaacaaggaatgctcgctaca
cagaagaatgagttggttcattctggaaggttgcagaaaggttccattgttaagctttct
cagttcatctgtaacgttgttcagaatcgcaaaattatcatcatagttgatttggatgtt
ataatggacaaatgtgacttgattggaaaacctgacccggcaccaaaagaagatcctgca
caatctgctgtgagtcatgcaggaaatgtacaatcagctgctggtcatttaggaagcaat
gctggaaactcacagtatttgaacagtggttcccatacaggtggtggtgttaatgttaga
ccaaatgtagctctgccatctatggatcgtccgaccgtgaatcctccagctagcgttgtt
tattctaacggttctggatctgcaagatacggtgcatctaatgcccctccaccttatcct
aaacctgagcctggagtcagtttgaacagaccagcgtcagtgaatgggtcttctggtgaa
cagaatacaagtttccgcaatccactatgtgagacttcaagaccagtgcaaaattcttat
gttcgccctcctcagcctgtgaaccaacagccatctcctatgtacaacagagggcctaca
ggaagaaatgatgctcctccaaggataattcccatatctgctttgaatccatatcagaat
atgtggacaattaaagccagagtaacagctaagggagaacttaggacctataccaattcc
cgaggtcagggaaaagtattttcttttgatcttttggattccgaccgtggagaaatacgg
gcaacttgctttaataccgtggctgaacagttctataatgtaattgaagttggtaaagtc
tatctggtttccaggggaagtctgaagccagctcagaagaattttaatcacctacctaat
gatcaagagataactcttgatatcacatcagttatacagccatgcgttgatgataactca
attctacaacagatctacaatttccgtcccattggtgacattgaaaatatgcaaaacaac
agcattgtggatgtgattgccgtggttacttctatcagtcctacagcatcaatcatcaga
aaaaatggcactgaaacacagaagagatctctgcagttgaaagacatgtctggccgaagt
gttgaattaactgtatgggggagtttttgcaatacagaaggacaaaagctgcaaaatatt
tgcgactctggggaatttccaattttggttgtaaaatctgccagagtaaatgatttcaac
gggaaatctattgggaccattgccaccagccaattattggtagaacctgattttccggag
gcttttacactgaggggatggtttgaccaggaagggaggaatgttccaagtcaatctatt
tccagagaatcatctagttttggtaaaagtgaagtgcagaagactatatctcaaattaaa
gatgaaaacttagggacttcagacaagcctgattggatatctatatgtgcaaatgttgta
ttttttaaatatgataatttttactacacagcttgtcctaacatgataggagataggaaa
tgtaataaaaaggttaccgacaatggggataagacatggcactgtgaaaggtgtgatacg
tctctttcttgtgattatagatacttgctgcaaatgcagatacaagatcacactggcatg
acatgggttactgcttttcaggaaggcggcgaggacatcatgggtatgcccgcaaaagat
ttgttttctgtgaaatttgaagaaaaagatgaagaaaaatttaaagaaatcattagtaag
gttgtcttcacgaaatacatgttcaagttaaaagtaaaagaggagacattcaatgacgaa
gcacgtgttaagtcaactgtagtgaaagcagagaagattgttaactttgcatctgaatct
aaatctcttctggatttgattgataaacttaagtctgagaaagcagaaggtaccactatt
aactctgctatcaacacaactggaccggggagccttccaattggacaagctacgccacca
gtatataatcctataaacagcaacactaatactggtagagattatgggaccccagcaaat
caagtgagtcagtatggaaaccaacataacagttcttttgcttcatcaggtgctcctggt
tcatatatgtcatgcagcaattgtggaggctctgatcatagctctgcacaatgcctacat
cttagaaatccgcctgaacagactgctgggggggcctacgtcaacacggtgtctggatca
ggtggtgcttcgggtaagtgctataaatgccaacaacctggacattgggcgagcaactgt
cctagtatgagtgccgccaacagggtatctggtggatccggtggtgcttcaggtaattgc
tataaatgcaaccagcctggacattgggcgaacaactgtcccaatatgagtgcagcacct
caatctcatggaaacagtaatacagggcaaggaagatatggtattgctcaaaatcagccg
gatggaagatgttga
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integrated database retrieval system
