Medicago truncatula (barrel medic): 112422027
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Entry
112422027 CDS
T01716
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC112422027
Organism
mtr
Medicago truncatula (barrel medic)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH
RT_RNaseH_2
RVT_3
Retrotrans_gag
DUF4219
Ty3_capsid
RNase_H
Integrase_H2C2
Asp_protease_2
Retrotran_gag_2
gag-asp_proteas
Gag_p24_C
Motif
Other DBs
NCBI-GeneID:
112422027
NCBI-ProteinID:
XP_039690577
LinkDB
All DBs
Position
5:complement(11977301..11996725)
Genome browser
AA seq
2274 aa
AA seq
DB search
MAETQTQAQAQIQAQAQALAQAQTQAQAVTEAQARSQAPPLPPPVRTQAEASSSWTLCAD
TPTQSAPQRSTPWFPPFTAGEIFRPIACEAQMPTHQYTTQVPLPAMRVTPATMTYSAPAI
HTIPQTEEPIFHSGNAEAYEEVSDLREKYDELRRDMKALHEKGKFGKTAYDLCLVPSVQV
PHKFKIPDFEKYKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTNLDK
TRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSPRIE
EKEMTKLFLKTLNHFYYKKMVGSTPKSFAEMVGMGVQLEEGVREGRLVKNTTPASGTKKT
GNHFPRKKEQEVGMVTHGGPQQTYPAYQHIAAITPTSHSFQQTNNHPQIPQYPQIPQYPQ
IPQYPQFPQNPSPQNTQQQNFQQQPYQQYPYQQYPQQNFQQQPYQQRPQQPRPPRMPINP
IPVTYAELLPGLLKKNLVQTRTAPPIPEKLPSWYRLDQTCDFHEGGRGHNIETCYAFKST
VQRLINDGKITFTDSAPNVQTNPLPNHGAATVNMIEDCQKTRPVQNVQHIRTPLVPLHAK
LCKVDLFEHDHDLCEVCLMNSGGCQKVRNDIQGLLDRGELVVERRCDDVCVITPEGPLEV
FYDSRKPTITPLVICLPGPLPYASEKAIPYKYNANMIEEGREVPIPSLSSVDNIVEDSRV
LRNGRVVPIVFPKRIDATVNKEVRTKDAGIAKEVDQPKEAGTSAEFDEILKLIKKSEYRV
VDQLMQTPSKISIMSLLLNSEAHKDALMKVLEQAFVDYDVTVGQFGGIVGNITACNNLSF
SDEELPAEGRNHNRALHISVNCKTDALSKVLVDTGSSLNVLSKTTYTQLAYQDAPLRRSG
VMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTL
HQKLKFVKNGKLVTVNGEEALLVSHLSSFSFIGADDVEGTPFQGFTIEDKNTKRNEASIS
SLKDAQKVIQAGGSTSWGKLIELPENKHREGLGFFPSTSLSTAKKGTFHSSGFIHAIIED
DPESVPRGLITPGVSSHNWVAVDVPFVAHLLEIDEPVEQHNPMISPNFEFPVYEAEEEES
EEIPDEISRLLEQEGKTIQPYGDELEVINLGTKEDKKEIKVGASLETSVKKQVIELLKEY
VDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFL
ITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDNTAKSKVFSF
MDGFSGYXKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIE
VYVDDMIVKSITEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV
DPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDC
QKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDETGRKEHAIYYLSKK
FTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQ
MLLSEYDIEYRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGE
GPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIE
EAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDE
NQMADALATLSSMIKVNHHNDVPLISVKFLDRPAYVFAAEAVFDDKPWFHDIKVFLQTRE
YPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIH
PNGHTMAKKILRAGYYWMTMESDCHKHTRKCHKWATPFSLVYGMEAVLPVEVEIPSLRVL
MEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLK
KIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDDFEKSSRSMMKSTGVASGGIVH
QALTKDNYERWKGVMQNYLQGQGLWDNVIENFDDNNTDFQASKKMNNTDFQASKKMKDGK
AFHIFQLSLGRELHETVKKSNGNHFNNQNGESKATPDLEQGLLGVVQSVSEVETEASRNT
KDAKALHIIQLACGREIVDEISHFKTAKNAWNHLKLQYGKELKAKPDTEQGMCL
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaactcagactcaagctcaagcacagattcaagcacaagcgcaagcattggca
caagcgcaaactcaagctcaggccgtaacagaagcgcaggcccgatcacaagcacctcca
cttcctccccctgtcagaactcaggccgaggcatcttcttcttggacactatgtgctgac
actccaacgcagtccgctccgcaacgttccacgccttggtttccacctttcactgctggg
gagatatttcgtcctatcgcttgtgaagctcagatgcccactcaccagtacacgactcaa
gtacccctacctgccatgagggtcactccagccaccatgacctactcagcacccgcgata
catacaattccgcaaactgaagagcctatctttcattcagggaatgcagaggcttacgag
gaagtaagcgacctacgagagaagtatgatgaactacgccgagacatgaaagctctccat
gaaaaagggaaattcgggaagactgcgtacgatctctgtttggtaccaagtgtgcaggta
cctcacaaattcaagattccagatttcgagaaatacaaagggagttcttgtcctgaggaa
catctaaaaatgtatgtgagaaggatgcctgcgtatgcccaagatgatcagattcttatt
tactacttccaagaaagcttgaccggccctgcttcaaagtggtacacaaacctagacaaa
acaagggttcaaactttccgtgacctttgtgaagcttttgtggaacagtacagctacaat
gtagacatgactccggaccgaagtgacctccaagccatgactcagggggataaagagacg
ttcaaagagtacgcccaacggtggagagacaccgctgcccaagtcagcccacgaattgag
gagaaagagatgaccaagctcttcctaaaaactttgaatcatttttattacaaaaagatg
gtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa
ggagtccgagaaggacgcttagtaaagaatacaactcctgccagtgggaccaagaagacc
gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgacacatggagggcct
caacaaacttatccagcctatcaacacattgctgccatcacacccacctctcactctttt
caacaaacaaataaccatcctcaaataccacaatatcctcaaataccacaataccctcaa
ataccacaatatcctcaattcccacaaaatccttcaccacaaaatactcaacaacaaaat
ttccaacaacaaccataccaacaatacccataccaacaataccctcaacaaaatttccaa
caacaaccttatcaacaacgcccacaacaacctcgaccaccaagaatgccgattaaccca
ataccagtcacctatgcagaattacttcccggcttactcaagaaaaaccttgtccaaact
agaacagctcctcctatcccagaaaaactaccatcttggtatagacttgaccaaacttgt
gacttccatgaagggggccgtggccataacattgaaacttgttatgcctttaaaagcaca
gtacagaggttgatcaatgatggaaaaataactttcacagactcggcgccaaatgttcaa
acaaatccattgccaaatcatggtgccgcaacagtcaacatgatcgaagattgtcaaaag
actcgtcccgttcagaatgttcaacatatcagaacacccttggttccgttacatgccaaa
ttatgcaaagtcgacctttttgagcatgatcatgatctctgtgaagtatgcctcatgaac
tccggaggatgccagaaagtaagaaatgatattcaagggcttctagaccgaggagagctt
gtggtcgaaaggaggtgtgatgacgtgtgtgtaataactcctgaagggcctttggaggta
ttttatgacagtcgaaagccaactatcacccctctggtgatctgcttaccgggtccactg
ccatatgcttctgaaaaagccattccatacaaatacaatgccaacatgattgaagagggt
cgtgaggttccaataccgtctttgtctagtgtggataatattgttgaagacagtagagtt
ctgagaaatgggcgcgttgttcccatagtgttcccaaagaggattgatgctacagtaaac
aaggaggttcggactaaagatgctggtatcgccaaagaagtggatcaacccaaagaggct
ggtacaagtgcagagtttgacgagattctcaagttaataaagaagagcgagtacagggtt
gttgaccaactgatgcagactccatccaaaatatccataatgtctttattactaaattct
gaggcccataaagatgcattaatgaaggtcttagaacaagcttttgtggattatgatgta
acggtgggtcagtttggcggaatagtagggaacatcactgcatgcaacaacttgagtttc
agtgatgaagagctcccagcagaaggaaggaaccataatcgggcgctgcatatatctgtg
aactgtaaaactgatgctttgtcaaaagtgctggtggatactggatcatctttgaatgtg
ttgtccaaaacaacttatacccaactcgcttaccaagacgcacctttgagacgaagtggg
gtaatggtgaaagcttttgatggctcgaggaaggatgtccttggagaggtggttctaccc
atcacagttgggccacaagttttccaagttaattttcaagtcatggacattcaagcttcg
tatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctg
catcaaaagctgaagtttgtgaagaatgggaagctagtaactgtaaacggtgaagaggct
ttattggtgagtcatttgtcatctttttctttcattggggcagacgatgtcgaagggaca
ccttttcaagggtttactatagaagataagaataccaagaggaatgaagcctctatctcg
tctctgaaagatgctcagaaggtcatacaagcaggagggtccacaagctggggaaaactg
atagagcttccagaaaacaagcaccgagaaggtttgggtttcttcccatctactagtttg
tccacagcaaagaagggcactttccacagttcgggctttatccatgcaatcattgaagac
gatcctgaaagtgtgccacgaggtcttataacgccaggagtatccagccacaattgggtt
gccgtagatgttccttttgttgctcacttattagaaatcgacgaacccgttgaacaacat
aaccctatgatctctcccaactttgagttccctgtgtatgaagcggaggaagaagagagt
gaagagatccctgacgaaatctctcgactactcgaacaagaggggaagaccattcagcct
tatggggacgaactagaagtgattaacttgggcaccaaagaagacaagaaagaaatcaag
gttggggcatcgctcgaaacaagtgttaaaaagcaagtgatagagctcctcaaagaatat
gttgatgtgtttgcctggtcctaccaagatatgccgggtctagacactgatattgtggtg
catcacctacctttgaaacctgagtgtccgccagtcaaacaaaagttgagaagaacacgt
cctgacatggctctcaaaatcaaagaagaggtacagaaacagatcgacgctggtttcctc
atcacatcaaattacccccaatggttagctaacatagtgcctgttccaaagaaagatggt
aaggtcagaatgtgtgttgactaccgtgatttaaacaaagctagcccgaaagacgacttt
cctttacctcatattgacgtgttggttgacaatactgcaaagtctaaagtcttctcattc
atggatggattctccggttatnnaaagatggcacccgaagatagagagaaaacatcattt
atcacaccttggggcactttttgttacaaagtaatgccgttcggtttaatcaatgcagga
gctacttatcagaggggtatgactactcttttccacgatatgatacataaagagattgag
gtctatgtggatgatatgatagtcaagtcgattactgaagaagaccatgtcaagtatcta
cagaagatgttccagcgcctgaggaagtacaaacttcgtctaaatcccaacaaatgcact
tttggtgtcagatccggaaagcttctaggcttcattgtcagccagaaaggcatcgaagta
gatcctgacaaagtcaaagccatcagagagatgcctgctccgagaacagaaaaagaagta
aggggttttcttggacgactaaattacatctcccggttcatttctcatatgactgcaact
tgtgggccgatattcaaactactccgcaaagaacaaggtattgtgtggaccgaagattgc
cagaaggcttttgacagcataaagaagtacttgctagaaccaccgattctcatccctcca
gttgaaggaagacctttgatcatgtacctaacagtgttagaaaattccatgggttgtgtg
ctcggacaacaagatgaaaccggaagaaaagagcacgccatttattatttaagcaagaag
tttactgaatgtgaatctcgatactccatgctcgagaagacatgttgtgctctagcctgg
gctgccaaacgcctccgtcattatatgatcaatcacactacttggctggtatctaaaatg
gatccaatcaagtacatatttgagaagcccgctttgacaggaaggattgcacggtggcag
atgctactatctgaatatgatatcgagtaccgttcccagaaggcaattaaaggcagtatt
cttgctgatcacttagctcaccaaccacttgaagactatcgacctatcaagtttgacttt
cctgatgaagagattatgtatctaaagatgaaagattgtgacgagccactattcggagaa
ggtcctgatccagattcagtgtggggtttgatatttgatggggctgtcaatgtatacggc
aacggcataggggcagtactccttactcctaagggtgctcacatccctttcacagcaaga
ctccggtttgactgcacgaacaacatcgctgaatatgaagcctgcatcatgggtattgaa
gaagccattgatctaagaatcaagaacatcgaaatatatggagattcagctcttgtaatc
aaccagatcaaaggaaaatgggaaactcttcacgcaggactaataccttatcgagactat
gcaagacgtttattgaccttcttcaacaaagtggaattacatcatatccctcgggatgag
aatcagatggctgatgccttggctactttgtcttcaatgatcaaggtgaatcatcacaat
gacgtgccactaatcagtgtcaaattccttgatagacccgcttatgtgtttgccgctgaa
gcagttttcgacgataaaccttggtttcatgatattaaggtgtttctccaaactcgagag
tatcctcctggagcatccaacaaagataagaagactctcagaagattatctagtaatttc
ttcctgaatggggatatcttgtacaaaagaaactttgacacggtcttgctcagatgtgta
gacaaatatgaagctgatttattgatacatgaaatacacgaaggatccttcggaattcat
cctaatgggcacacaatggctaaaaagatattgcgagcaggctactactggatgacaatg
gaatcagattgccacaagcataccagaaagtgtcacaagtgggcaactcccttctccctg
gtatatggcatggaggcagtacttcctgtagaagtcgaaattccatcattgagagttcta
atggaggctgacttatcagaagctgaatgggttcagaatagatacgaccagttgaatctg
attgaagaaaagcgcatgacggccctatgtcacggacaattatatcaaaaaaggatgaaa
caggcctttgacaagaaagttcgtccccgtgagtttaaagaaggtgatcttgtgctcaaa
aagattttctctttccaaccagactcccgaggcaagtgggctcctaattatgaaggtccg
tatgttgttaaaagagccttctcaggtggtgccatgactctacaaaccatggacgatttc
gaaaaatcaagtagaagtatgatgaaatcaacaggagtagcctccggtggaatagttcat
caagcactcactaaagacaactacgaaagatggaaaggtgttatgcaaaactatctgcag
ggacaaggtctctgggacaatgtcatcgagaattttgatgataataatactgattttcag
gcttccaagaagatgaataatactgattttcaggcttccaagaagatgaaggatggaaaa
gcttttcatatctttcaactatcacttggacgagagctacatgaaacagtaaaaaaatcc
aacgggaatcacttcaacaaccaaaacggcgagtcaaaagccacccctgatcttgagcaa
ggtcttttgggcgttgtccagagtgtttcagaagttgaaactgaggcttcaaggaataca
aaagatgcgaaagctttgcatatcattcaactagcatgtggacgagagattgtcgacgag
attagtcattttaaaacagccaaaaatgcctggaaccatttaaaattacaatatggcaaa
gagttaaaagccaaaccagatactgaacaaggtatgtgtttatag
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integrated database retrieval system