Medicago truncatula (barrel medic): 11406415
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Entry
11406415 CDS
T01716
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
11406415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11406415
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
11406415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Motif
Other DBs
NCBI-GeneID:
11406415
NCBI-ProteinID:
XP_003594206
UniProt:
Q2HT28
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All DBs
Position
2:complement(9182493..9190360)
Genome browser
AA seq
536 aa
AA seq
DB search
MDLQLKSSCSGCGETTGLYGSNCKHLTICAPCGKTMAENRSKCSTCGALLTRLIREYNVR
ASSANDKNYFIGRFMTGLPDFSKKKSAENKWSLQKDGLKGRQVTDATREKYKNRPWLLED
ETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
RKKTADGYQRWMMKAANNGPAAFGEHGKLDDKESNAGGGRGRKKTGDDEDEGPSSDKGEE
DEDEEVDRKKRPNKKNTFDDDEEGPRGGDHDEDDYDVEKGDDWEHEEIFTDDDEAVGNDP
EEREDLAPEVPAPPEIKQDDEEEEEDEDNEEGGGLSKSGKELKKLLGRTGGLSESDDDDD
DDDDDIDDEDGVPAVTATKQKEPKEEPVDNSPSKPTATGPARGTPTSKSSKAKRKANEEA
KPSISVPPKKVKTENEPKSSAKDVNGSSSKSNAPPRGTPPPSSNSGSSNAASGPVTEEEI
KAVLLQRTPLTTQELVAKFRARLRCKEDKEAFANILKRISKIQKTNGSSYVILREK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcaattgaaatccagttgtagcggatgcggtgaaaccaccggtctctacgga
agcaattgcaagcacttgactatttgcgccccctgtggcaaaaccatggcggaaaatcgc
tctaaatgctccacctgtggcgcgttgctcactcgtttgattcgagagtataatgttcgt
gcgagttcggcaaatgataagaattatttcattggaaggtttatgactgggttgcctgat
ttttcaaagaagaaaagtgctgagaataaatggtctttgcagaaagatggattgaagggt
cgtcaagttactgatgctacaagggagaagtacaagaacaggccttggctcttggaggat
gaaacaggtcagtcccagtttcagggtcatcttgaaggttcacaatcagctacgtattac
ctgctaatgaaggaaaagaaggagtttgttgccattcctgctggttcctggtacaacttt
aacaaggttgcacaatataagcaattgactttagaggaagcagaagagaagatgaaaaat
aggaaaaaaactgctgatggatatcaaagatggatgatgaaagcagcaaacaatgggcct
gctgcatttggtgaacatgggaagttagatgacaaggagagcaacgcagggggtgggaga
ggccgtaaaaagactggtgatgatgaagatgaaggtccttcctctgataaaggagaggaa
gatgaagacgaggaagtagataggaagaaaagaccgaataaaaaaaacacctttgatgat
gatgaagaaggtccaaggggaggggaccatgatgaggatgattatgatgttgaaaagggt
gatgattgggagcatgaagagattttcactgatgatgatgaagctgttggtaatgatccc
gaggaaagggaagatttggctcccgaagtccccgctcctcctgagatcaaacaggacgat
gaggaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaatctgggaaa
gagctgaagaagctgcttgggcgaactggtggtctaagtgaatctgatgatgatgatgac
gacgatgacgacgatattgacgacgaagacggtgttcctgctgtgactgctactaagcag
aaggaacctaaggaagaacctgttgataacagtccttcaaaacctacagcaacaggacct
gctcgtggaacacctacttcaaagtcttcaaaggcgaaaagaaaagcaaacgaggaagca
aagccatctattagtgtaccacctaagaaggtgaagacagaaaatgaaccaaaatcttct
gcaaaagatgtcaatggatcttcgtccaaaagtaatgcacctccaagaggtacaccacca
ccgtcatcaaactctgggtcttctaatgcagcttctggacctgtaaccgaggaagaaatt
aaggctgttctactgcagaggactccgttaaccacacaggagcttgtagctaaatttagg
gcaagattaagatgtaaagaggataaggaagcttttgctaatatcctgaagagaatctct
aagatacagaaaaccaatggatccagttatgttatcctgagagagaagtaa
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