Medicago truncatula (barrel medic): 11406805
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Entry
11406805 CDS
T01716
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
11406805
03015 mRNA surveillance pathway
11406805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11406805
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
11406805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
11406805
NCBI-ProteinID:
XP_003596202
UniProt:
G7IJA2
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All DBs
Position
2:complement(34989931..34995993)
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AA seq
415 aa
AA seq
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MAKPGRARRSPPSGSVSGSSSLSSSSRSSSRSRSRSRSFSSSSRSPSRSSKSRSRSPPPP
RRKSSAEPARRGRSPPLPPPPQSKRPSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIF
SNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYMDGAQIDGNVVKARFTLPPR
QKASPPPKAVAPKRDAPRTDNAGAEVEKDGPKRPRESSPRRKPPPSPRRRSPVPRRAGSP
RRPESPRRRADSPVRRRLDSPYRRGAGDTPPRRRPVSPGRGRSPSPPPRRLRSPARVSPR
RMRGSPGPGRRRSPPPPPRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRR
GRPPMRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSSSPPPARKP
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacctggtcgagctcgtcgctcaccaccatcaggttccgtctccggatcttct
tctctctcctcctcttcccgttcctcttctcgctcccgctcccgttccagatccttctct
tcctcttctcgctctccctcccgcagttccaagagccgtagccgtagtcctcctcctcca
agacgcaaaagttctgctgaaccagctaggcgaggtcgatctcctcctcttcctccacct
ccacagtctaagagaccttctcctcctccaaggaaaccttctcctgtacgtgagtctctt
gttctccacgttgagaaactcagcaggaatgtcaatgaaggccatttgaaagaaattttc
agtaattttggcgaggttgtaagtgtggagttggtgatggatagagctgttaatcttcca
aaaggatatggatatgtgcatttcaagacaagaggggaagctgaaaaagcattattgtac
atggatggtgcccaaatagatggcaatgttgttaaggcaagatttactctacctccaaga
cagaaagcttcaccacccccaaaagctgttgctccaaagagagatgcacccaggactgat
aatgctggtgcagaagttgaaaaagatgggccaaagcgtccaagagaatcttctcctcgg
agaaaacctcctccctcaccacgaagaagatctcctgtgcctcgaagagctggatctcca
agacgaccagaatctcctcgccgccgtgcagattctcctgttcgtcgtcgattagactct
ccttatcgtcgcggagctggagacacacctcctaggaggagacctgtgtctcccggaaga
ggtcgttctccatctccaccaccaaggcgccttagatcccctgcaagggtatcacctcga
aggatgcgtggaagcccaggcccaggtcggagacgttctcctcctccacctccaagacgc
cgttcacctcctagacgagcccgtagtcctcctagaagatctccagttggtcgtaggcgt
agtcgctctccaatacgtagatctgcacgctcacgctcaagatcattctcacctcgcaga
ggcaggccacctatgagacggggaaggtcatcatcttactctgattcgccaagtcctcgc
aaggtatcccggagatcaaagagtcgcagtccaagaaggcctttgaaaggacgagccagt
agcaacagtagcagcagcagttcaccacccccagctcgcaaaccatag
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