Medicago truncatula (barrel medic): 11425603
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Entry
11425603 CDS
T01716
Name
(RefSeq) nuclear pore complex protein NUP98B isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
11425603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11425603
03036 Chromosome and associated proteins [BR:
mtr03036
]
11425603
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
11425603
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
11425603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
zf-C3HC4_3
zf-RING_16
Auts2
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
11425603
NCBI-ProteinID:
XP_024634339
LinkDB
All DBs
Position
1:32462295..32467161
Genome browser
AA seq
509 aa
AA seq
DB search
MSRGTSTGVFGEAQTPSPFSSNTNFGTSSSTPAFGKSSSPSSFSQSVFGLQNNSSNNPFA
PKPSGSPTLFGLETCNSMSRGTSTGVFGEAQTPSPFSSNTNFGTSSSTPAFGKSSSPSSS
SQSVFGMQNNSGNNLFAPKPSGSPTLFGLETCTSMSRGTSTGVFGAAQTPSPFSSNTNFG
TSSSTPAFGKPLNPSSSSHSVFGLQNNSSNNFFAPKPSGCPTLFGSETGNSMSGVTSKGV
FGAGQTLCPVSSDTNFGASSSTPAFDFGQLSSPSSSSRSMFGQQNTSSNNFFAPKSFGSP
TPFVSETGNSMSRGTATGVFGTAQTPSPFSSNTNFGASSSTSAFGNKSSSSRGSSLFGQE
PAFVGFGSTPTQTSPCRSAIQPSRPAFGSNAGHASLYGSLSIHDQHRDMRMDISGMSYEE
LLALGERIGYVNTGLSESLISKYLTKTLYCSAEQSQEGTCAICLEEYKNMDSIGTLETCG
HDYHVSCIRKWLSMKNLCPICKVSALPDE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggggtacttccacaggtgtatttggcgaagctcaaacaccgtctcccttctct
tccaatactaattttggcacttcgtcttcaactccagcttttggtaagtcatcgagcccg
tctagcttctctcagtcagtgtttgggctgcaaaacaattcaagtaacaatccttttgct
cctaagccttctggtagtccaactctatttggattggaaacatgcaattccatgtctagg
ggtacttccacaggtgtatttggcgaagctcaaacaccgtctcccttctcttccaatact
aattttggcacttcgtcttcaactccagcttttggtaagtcgtcgagcccgtctagctcc
tctcagtcagtgtttgggatgcaaaacaattcaggtaacaatctttttgctcctaagcca
tccggtagtccaaccctatttggattggaaacatgcacttccatgtctaggggtacctca
acaggtgtatttggcgcagctcaaacaccgtctcccttctcttccaatactaattttggc
acttcctcttcaactcctgcttttggtaagccgttgaacccgtctagctcctctcactca
gtgtttgggctgcaaaacaattcaagtaacaatttttttgctcctaagccatctggttgt
ccaactctatttggatcggaaacaggtaattccatgtctggggttacttcgaaaggtgta
tttggtgctggtcaaacactgtgtcccgtctcttccgatactaattttggcgcttcgtct
tcaactccagcctttgattttggtcagttgtcgagcccgtctagctcctctcggtcaatg
tttgggcagcaaaacacttcaagtaacaatttttttgctcctaaatcatttggcagtcca
actccatttgtatcggaaacgggtaattccatgtctaggggtaccgccacgggtgtattt
ggcacagctcaaacaccgtctcccttctcttccaatactaatttcggcgcttcgtcttca
acttcggcttttggtaataaatcttcgtcatctcgcggatcatcactctttggtcaggag
cctgcttttgtaggttttggctctactcctactcaaacaagtccatgtagaagtgccatc
caaccatcacgaccagcatttggaagtaacgctggtcatgcttcactgtatggttctttg
agtatacatgatcaacatagggacatgcggatggacataagcggcatgagctacgaggaa
ctacttgcacttggagagaggatcggctatgtgaatacaggattatctgagagtttgatt
tctaagtatttgacaaaaacactgtactgttcagctgagcaaagtcaagaaggaacttgt
gcaatttgtctggaagaatacaagaacatggacagtattgggacattggaaacttgtgga
catgactaccatgtgagctgcattagaaagtggttatctatgaagaacttgtgtcccata
tgcaaagtttctgctttgcctgatgagtga
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