Medicago truncatula (barrel medic): 11427645
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Entry
11427645 CDS
T01716
Name
(RefSeq) serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
11427645
03015 mRNA surveillance pathway
11427645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11427645
03041 Spliceosome [BR:
mtr03041
]
11427645
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
11427645
Spliceosome [BR:
mtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
11427645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
11427645
NCBI-ProteinID:
XP_003606715
UniProt:
G7JCF1
LinkDB
All DBs
Position
4:32339914..32346462
Genome browser
AA seq
911 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMDVMRPWITRKVTELL
GFEDEVLINFIHGLLEAKKVNGKEIQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQ
QFLDAKEEELLKKKAESDRITSEIQRKKDKESKDIMEERLKKLDGRLDAKDNDAASDPTL
KSRDSGHYIQDGKQTDRNGVRARNRISPHSPAVFNSPYRGSPARAISKSFSNSRSYSRSP
KGGGRSISSERIQRSSRRQSISPRRRSPQRSPHRRPSYSRRRSRSSSSSPIRRGMHSPFR
RRRTPSPVQRRRTPSPVRRRSPSPVRRRRSPSPVRRRRSPPSPVRRRRSPPSPVRQRRSP
YPARRRRSPSPVRRRRSPSPIRRRRSPSPMNRRRSPSPIRRRSPSPLQQRSPSMRRRSPS
PMRRIPLSRGRRSSSPMQSPVMRRYDSRTPRRRSPSPLQHRSPVSGKKRSASASPKRSPS
QDEWSSQSPVRVSPSPVRRRTSPRHQRSPLQSSMGRVRVQKILSPEVYQPSSPLRSVQRD
KNGKASGYKSQDSMSTPDKSPIRSISPPQARSKTSSKNRSPHEISLRQPRDKLTNKGSLS
PRLSPPKKPTNHKPTHDIPETSEGAEEAYYSRERKDPKSNSSEKKSRHSPVSKRIGSSAK
FHDEDEFYPERAASHLASDTKHYDNNERNKKGQDIKCDKSSGKGGESPGQQKSPMNKEFF
SGEKLRDTYAAETKKTDDKDQINSKYAKSSDQHHKSEGTQDLVGKVDHVNQSASYDSVSE
ESDKHRRDGKDRRKHKRSERKVVSSDENDSYDSELEDRKEAKRRKKEEKKKLRKEEKHRK
REERRRKREERHAEKLKMKSKPGYISDNEEAERRDGHQSDDEEEPYDPKKLEIELRNKAL
ESLKAKKSMNN
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcggtttttttcgaggtacatctgcggatcaggatactcggttttcgaacaag
caagcgaagctgcttaagtcgcagaagtttgcgccggaattggagcatctggtggacatg
acgaaggtgaatatggacgtaatgaggccttggatcactagaaaagtgaccgagcttctt
gggtttgaagacgaagtgcttattaacttcatacatggtcttctggaagcgaagaaagtt
aacgggaaggaaattcaaatacaaattactggattcatggaaaaaaacaccggcaagttc
atgaaggagctttggacacttcttctcagtgcacagaaaaatgccagtggtgttcctcag
cagttcttggatgctaaagaagaagaactcctgaaaaagaaggctgaaagcgataggata
acaagtgaaattcagaggaagaaagataaggagagtaaagatatcatggaagagaggctg
aagaaactggatggtcgtctagatgcaaaggataatgatgctgcttcagatccaactttg
aagtccagggattcagggcactacattcaggatggaaaacaaactgacaggaatggtgtt
agagcaaggaacaggatttctccacattcacctgcagttttcaattcaccttatcgaggc
tcacctgcaagggcaatcagtaaatcattttcgaattcccgaagttattcaagatctcca
aagggtggagggcgttccatttcttctgaaaggatacagcggtcttcacgacgacaatct
atttctcctcgaagacgttcaccacaaagatctcctcacaggaggccatcttattcaagg
agaagatctagatctagctcatcttctcctatccgacgtggaatgcattctccatttcgt
cgacgcagaacaccctctcctgttcaaagacgcagaacaccctctcctgttagacggaga
tcgccctctccagttcgacgacgaagatcaccctctccagtacgacgacgcagatcacca
ccttctccagtacgacgacgcagatcaccaccttctcccgtacgacaacgcagatcacct
tatcctgcacggagacgcagatctccctctcctgtgcgacgacgcagatcaccttctcct
atacgacgacgtagatcaccttctccaatgaaccgacggagatcaccatcacctattaga
cgaaggtcaccctcaccactgcaacagagatctcctagtatgcggcgcaggtcaccttca
ccgatgcgtcgaataccactaagccgtggacggaggtcaagctctccaatgcaatccccc
gtaatgcgaaggtatgatagtagaactccacggcgcaggtctccatctcctttgcagcat
aggtcacctgtttcgggcaagaaaagatctgcaagtgcctcccctaagaggtctccttct
caagatgaatggagttctcagtctcctgtacgtgtatctccatctccagtcaggaggaga
acttcaccaagacaccaaagaagtcctttgcagtcttctatgggaagagtcagggtgcaa
aaaatattgtcaccggaagtttatcaaccctctagtcctttgcggtctgtacagagagat
aaaaatggcaaagcttcaggctataaatcacaagattcaatgtccacaccagataagtct
ccaatccgatcaatatcaccaccacaagcaagaagtaagaccagcagtaaaaatagaagt
ccacatgaaatctctctaaggcaaccaagagataaattgaccaataaaggaagcttgagt
ccccgcttgagtcccccaaagaagccaacaaaccataaacctacccatgacatcccagag
acaagtgaaggagcagaagaagcatattattctagagagcgcaaagatcctaaatcaaat
tcatccgaaaagaaatcaagacactccccagttagtaagcgaataggttcatctgcaaaa
tttcatgacgaggatgagttttatcctgaaagggcagcaagtcatcttgcttctgatact
aagcattatgataataatgaaaggaataagaaaggccaggatataaaatgtgataaatct
tctggcaagggaggcgagtctcctggtcaacagaagtcaccaatgaacaaggagtttttt
tctggcgagaagcttcgcgatacttatgctgcagaaacaaaaaaaactgatgacaaggat
caaatcaattcaaaatatgccaaaagtagtgatcagcaccacaaatcagaaggcactcaa
gatttagttggaaaagttgatcacgtcaatcagagtgcttcttatgattctgtttctgaa
gaaagtgacaagcatagaagggatggaaaggataggagaaagcataaaaggtcagagaga
aaagttgtttcttctgatgagaatgatagttatgattctgagttagaagacaggaaagag
gccaagaggaggaaaaaggaggagaagaagaagctgcgaaaggaggagaagcatcgaaag
cgggaagagagacggcgaaaaagggaagagcggcatgctgaaaagctgaaaatgaagagt
aaaccaggctatatttcagacaatgaggaagctgaacgaagggatggtcatcaaagtgat
gatgaagaagaaccatacgatccaaagaagcttgagattgagctgcgtaataaggctctc
gagtccctcaaagcaaagaagagcatgaacaattaa
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