Medicago truncatula (barrel medic): 11429946
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Entry
11429946 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11429946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11429946
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11429946
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
11429946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
DEAD
Helicase_C
HA2_C
OB_NTP_bind
Ank_5
Ank_2
nSTAND3
HA2_N
AAA_19
Trypan_PARP
ResIII
AAA_11
FAM75
ATPase
AAA_22
Ank_4
Ank
AAA_23
Mei5_like
Ank_3
Rad17
T2SSE
AAA_7
AAA_16
Myosin_head
Motif
Other DBs
NCBI-GeneID:
11429946
NCBI-ProteinID:
XP_003617330
UniProt:
G7KD14
LinkDB
All DBs
Position
5:40568049..40576152
Genome browser
AA seq
1190 aa
AA seq
DB search
MSNVSNKKANKLARFKKYAQPTKIDESTRRRIIRTLESFQSSDEEEYKFEAGLSNDDRRF
AHLLAQKMGFKSKSYGTGKERRLSVRKGNKKGGSDNQSANLPHFTFSEEAKRAMGDLFAH
FPPGDGNLKDMVGEKSGSMVNARHRHSDIFSRPIMTKDEITRKLEAVTSRRETVSDLKVI
TVLRSKLPIASYKDAITSAVESHQVVLISGETGCGKTTQVPQYILDYMWGKGETCKILCT
QPRRISAMSVSERISRERGEAAGENVGYKIRLDSKGGQQSSIVLCTTGVLLRVLVSKGSR
RSMKNPAKDEISDITHIIMDEIHERDRYSDFMLAIMRDMLPLYPHLRLVLMSATIDTARF
SQYFGGCPVIQVPGFTYPVKTYYLEDVLSAVKSSNDDGSTFSIPTNNHMISEEHKLSFDE
AINLAWSNDEWDLLSELVSSEETPELFNYQHSLTGLTPLMVFAGKGRIGEMCMLLSFGAD
CNLRSKDGTTALEIAERENQPEAAEIIKKHMDGSSSTEEQSILNKYLERVRPEIVDVVLI
EQLIRKICTDSKDGGILVFFSGWDDINRAREKLLASSFFNNPSKFVVISLHSMVPTLEQK
KVFKRPPPGCRKIVLSTNLAETAVTIDDIVYVIDTGRMKEKSYDPYNNVSTLQSSWISKA
SAKQREGRAGRCQPGICYHLYSKLRAASLPDFQTPELKRMPIEELCLQVKMLDPSCKIEV
FLAKTLDPPVSESIRNAIVVLRDIGALSTDETLTDLGEKLGSLPVHPLISRMLFFAILMN
CLDPALTLACASDYKDPFTLPMLPEDKKRAADAKTELASLYGGCGDQFAVLAAFECWNNS
KKMGLEARFCSQYFVSGGAMKMLSGMRKQLQKELIRIGFILSDVSSYSMNAHDPGVLHAV
LVSGMYPMVGRLCFPNKGAKRAIIETASGDKVRLHNRSTNFKLSFKRNLGHTLVVFDEVT
RGDMGVNIKNCSLVGPLPLLLLSTEIAVAPGEQNDHKKEAEDDDDDEGSGDEAGIDDGMD
LDTKSIGNNEDKFMSSPDDMVRIIVDRWLYFGSTAIDVSLLYCLRERLSAAILYKVTYPS
NPLPPILGASIHAIACILSCDGCSGMSVATDGVDNLTTMVNATNLGKPQPQPQPQPQPQP
QPQPQPQQQPQPQPQRYGNRPKGSSAAFINHGGHQNLGPSTASTSTSRNV
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgtgtcgaacaaaaaggccaacaagctagcaagatttaagaagtacgctcaa
cctaccaaaatcgatgaatctaccaggcgtcgaataattcgaactttggaatcttttcaa
tcttctgatgaagaagagtacaagtttgaagctggtttgtccaatgatgaccgtcgtttt
gcacatttattggcccaaaaaatggggtttaagtctaaaagttatgggactgggaaggag
aggagattgtcggttcgaaaaggcaataagaagggcgggagtgataatcagtctgcgaat
cttcctcatttcacattctcggaagaggcaaaacgggcaatgggcgatttatttgctcat
tttccacctggtgatggaaacttgaaggatatggttggagaaaagagcggcagcatggtc
aatgcaagacataggcattctgatatttttagcagacccataatgacaaaagatgaaatt
actcggaaattggaagctgtaacttctagaagggagactgtatctgacttgaaagtgatc
actgtgttgagatctaagctaccgattgcatcttacaaggatgcaattacatcagcagtt
gaatcccaccaggtagttctcatatccggtgagactggctgcggaaagactactcaggtc
ccacaatatattttggattatatgtggggtaagggtgagacatgtaagatactttgcact
cagccacggcgtatctctgcaatgtcagtttctgaaagaatctctagagagagaggagag
gctgctggagaaaatgttggatacaagatacgcttagatagcaaaggtggacagcaatca
tctattgtgctatgtactactggagttctattaagggtgttggtttctaagggttctcgt
cggtcaatgaaaaatcctgcgaaggatgaaatttctgacatcactcacatcattatggat
gaaattcatgaaagggaccgatattcagacttcatgttggcaataatgagagacatgctc
cctttatatcctcatctacgtctggtattaatgagtgctaccattgatactgcgagattt
tctcaatattttgggggatgcccagttatccaagttccagggttcacttatccggtcaaa
acatactatttggaggatgtactttctgcggtaaaatcaagcaatgatgatggttccaca
tttagtattccaacaaacaatcacatgataagtgaagaacataagctttcctttgatgaa
gctattaatttggcttggtctaatgatgagtgggacctactgtcagaattagtttcttcc
gaagaaaccccagaactcttcaattatcagcattctttaactggccttacaccgttgatg
gtgtttgccggaaaaggtagaattggtgaaatgtgcatgctcttatcttttggtgctgat
tgcaatttaaggtccaaagacggaacaactgcactagagattgctgaaagggaaaaccaa
ccagaagctgctgaaataataaagaaacacatggatggttccagctcgacagaagagcag
agtatacttaacaaatatcttgaaagagtccgacccgaaatagttgatgttgttctgata
gagcagctgataagaaaaatatgtactgattcaaaagatggaggcatccttgtttttttt
tcaggatgggatgatataaatagagcgcgcgagaagttgctagcatcctctttttttaat
aatccatcaaaatttgtggtcatatctctgcattcaatggttccaaccttggagcaaaag
aaggtttttaagcgtccacctcctggctgccgcaaaattgttctctcaaccaatctcgct
gaaacagctgtcaccattgatgatatagtgtacgtcatagacactgggcgaatgaaggaa
aagagttatgatccttataataatgtgtcaactcttcaatcatcttggatttcaaaagcg
agtgcgaagcaacgagaagggcgtgctggccgttgtcaacctggaatttgttatcatttg
tattcaaagcttcgagcagcgtcattgccagattttcagactccagaactcaagagaatg
cctattgaggagctatgtctgcaggtaaagatgcttgatccaagctgcaaaatagaggtg
tttcttgcgaagacattagacccaccagtttctgagtccatacgtaatgcaattgtcgtc
cttcgtgacattggtgcattatcaactgatgaaacgcttactgaccttggagagaagctt
ggttctctacctgttcacccattgataagcaggatgcttttttttgctatcttaatgaac
tgccttgacccagctttaaccctagcatgcgcatctgattataaagatccatttacactt
ccaatgttacctgaagacaagaagagagccgcagatgccaaaactgaacttgcttcttta
tatgggggttgtggtgatcaatttgccgtactagctgcatttgaatgttggaataattca
aagaaaatgggtctagaagctcggttttgttcccagtattttgtgtctggaggcgccatg
aagatgttatctggcatgcgtaagcagctccaaaaggaacttatccgaattggatttatt
ctttctgatgtttcaagctacagcatgaatgcgcatgaccctggtgtgttgcatgcggtt
ttggtatctggtatgtatccaatggttgggagattatgttttccaaataaaggtgcaaaa
agggctataattgaaactgcaagtggtgataaagttcgcttgcacaaccgttccacaaat
tttaagttgtcgttcaagagaaatttaggccacactctagttgtgtttgatgaggttact
cgcggtgatatgggtgttaacataaagaattgcagtcttgtaggaccacttccactcttg
ctgctttcaactgagattgctgttgctccaggagaacagaatgatcataaaaaggaggcg
gaggatgacgacgatgatgaagggagtggagatgaagctggaattgatgatgggatggat
ttggatactaaatccattggaaacaatgaggataagttcatgtcctcccccgatgatatg
gttagaataatcgtggaccgttggctttattttggttcaacagcaattgatgtttctctg
ttatactgcctaagagagcgattgtcagcggcaattttatacaaagtaacatatccgagc
aatcctcttcctcccatcctaggggcatctatacatgctatagcttgcattctatcttgt
gatgggtgttctggcatgtcagtggccactgatggcgtggacaatctgacaactatggta
aatgcgacaaatctagggaagccgcagccacagccgcagccacagccgcagccgcagccg
cagccgcagccgcagccacagcaacagccacagccacagccacaacggtatggtaataga
ccaaaaggatcctctgcagcgtttataaatcatggtggacaccagaaccttggaccttct
acagccagcacatctacttcaaggaacgtttga
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integrated database retrieval system
