Medicago truncatula (barrel medic): 11434004
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Entry
11434004 CDS
T01716
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03020
RNA polymerase
mtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
11434004
09124 Replication and repair
03420 Nucleotide excision repair
11434004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11434004
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11434004
Enzymes [BR:
mtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
11434004
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
11434004
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
11434004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
11434004
NCBI-ProteinID:
XP_003612256
UniProt:
G7JYR7
LinkDB
All DBs
Position
5:9150244..9159319
Genome browser
AA seq
1834 aa
AA seq
DB search
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMAVVQIEHGETTERGKPKIGGLSDPRLGTI
DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADENDHK
FKQAMRIKNPKHRLRKILDACKNKTKCEGGDDIDLPEHDTKEPLKKSRGGCGAQQPKITI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR
PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS
LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQIN
LIRYSSWHNENERGPITPGDTMVRIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKL
EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMKKTDFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRVQ
LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVP
GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEVCKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDVDFVKSYYEMPDEEV
ALDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDGDLTCIFNDDNAEKLILRIRIM
NDEAPKGDIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQKFDENEGFKP
HEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNETGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMTPGRSPISATP
YHEGLMSPNYLLSPNLRLSPSNDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSP
SSPRLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGTSPDYSPSSPQF
SPSTGYSPSQPGYSPSSTSQYTPQTSDKDDTGTQ
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggttccctttttctccggcagaggtcgccaaagtccgtatggttcagttc
ggcatactcagtcccgatgagatcaggcaaatggctgtggtgcaaattgagcacggcgaa
acaacggaacgaggaaagccaaaaattggaggattgagtgatcccagactcgggactatt
gataggaagatgaagtgcgaaacctgcactgccagcatggctgaatgtcccggacatttt
ggttatttggagcttgcaaagcctatgtttcatatagggttcttgaagactgtactcagt
ataatgcgatgcgtatgcttcaattgttcgaaaattctcgctgatgagaatgatcataag
tttaagcaagctatgaggatcaagaacccaaaacacagactgcggaagattcttgatgct
tgcaaaaacaaaacgaagtgtgaaggcggtgatgacattgaccttcctgaacatgatact
aaggagccgcttaaaaagagtcgtggtggctgtggtgctcagcaaccaaagatcactatt
gaggggatgaaaatgattgcagagtacaaagctcaaaggaagaaaagtgatgaccaggaa
cagcttcctgaacctgttgaaaggaaacagactctttctgcagaaagggttttgggtgtt
ctgaaaaggataagtgacgaggactgccagttgttaggcttgaatcctaagtatgcccgt
cctgactggttgattttacaagtgctcccaattcctcctccacctgtgagaccttcagta
atgatggacacatcctccaggagtgaggatgatctaactcatcagctggccatgatcatc
aggcacaatgaaaatctgaagagacaagagaggaatggttctcctgcacatattatttca
gaatttgctcagctgttgcagtttcatatagccacatattttgataatgagttgcctgga
ttgccaagggctactcaaagatcgggaaggcctatcaaatcaatatgtagcaggcttaaa
gcaaaagaaggccggattagaggcaacttgatggggaaaagagttgatttttctgctcga
acagtaatcacaccagatccaaccatcaatattgatcaattgggagtgccatggagtatt
gctctgaatcttacataccctgagactgtgactccttacaacattgaaagattgaaggaa
cttgttgagtacggaccccatcctccacctggaaaaactggtgccaagtatatcattcgt
gatgatgggcaaaggcttgatctcagatatttgaagaaaagtagcgatcaccatttggag
cttggatacaaggtggagcgccatttgaatgatggagattttgtcctcttcaatcgtcaa
cccagtcttcataagatgtctatcatggggcaccgaatcaaaatcatgccctattctact
tttcggctcaacttgtcggttacctcaccatataatgctgattttgatggtgatgaaatg
aatatgcatgttcctcagtcatttgaaaccagagctgaggtgttggagctgatgatggtg
cctaaatgcattgtgtcacctcaggcaaacaggccagtaatgggaattgtccaagattca
cttttaggatgcaggaaaattaccaaaagagacacattcatttcaaaggatgtttttatg
aatatattgatgtggtgggaagattttgatggcaaagttcctgctcctacaatattgaaa
ccagaaccactgtggactgggaagcaagttttcaatctgattattcctaagcagataaat
ctaattagatattctagctggcacaatgagaacgaaagggggcccataacccctggagat
accatggtcagaattgaaaagggggaactacttactggtactctttgcaaaaagacacta
ggaacaggcactggaagtctcattcatgtcatttgggaagaggttggccctgatgcggct
cgcaaatttcttggccatactcagtggcttgtaaactactggcttttacagcaagctttt
agcattggcattggtgatacaattgctgatgcgtctaccatggagactattaatcagact
atttcacaggctaaggataaagtgaaacaactcatccgggaagctcaggaaaagaaatta
gaggctgaacctggtcggacaatgatggattcatttgaaaatagagtgaaccagactctg
aatagagctcgtgatgacgccggaaatagtgcccaaaaaagtttatctgagagcaataat
ctgaaagccatggtcacagctggttctaagggaagtttcattaacatatctcagatgact
gcttgtgtgggccaacagaatgttgagggtaaacgaattccatttgggttcatagaccgg
acattgcctcactttacaaaagatgattatgggcctgaaagtcgtgggtttgtggagaac
tcatatctccgtggactgacccctcaagagttctttttccatgccatgggtggtagggaa
ggtcttattgatactgctgtgaagacttcagaaactgggtacattcagaggcggcttgta
aaggctatggaggacatcatggttaaatatgacgggacagttaggaattctttgggagat
gtcatacagtttctctatggtgaagacggtatggatgctgtttggattgaaacgcagaag
ctggattcactgaaaatgaaaaaaacagattttgacagggcttttaggtatgaatttgat
gatgaaaactggaagcctacttacatgcttgaagagcccgtagaagacttaaaaacaatt
agagagttccgtaacgtgtttgaggcggaagttcaaaagcttgacgccgatagggttcaa
cttgcaactgagatagccaccactggtgacagttccctaccactacctgtcaaccttaaa
aggcttatctggaatgcgcagaagacctttaaggttgacttccgaagaccttctgatatg
catccgatggaaattgtggaagctattgataagctccaggagagacttagagtagttcct
ggggaggaccttttaagtcaggaagctcagaaaaatgccactctcctgttcaatattctg
cttcgtagcacttttgccagtaaaagggtcctggaggagtacaggctttctcgcgaggca
tttgaatgggtagtgggagaaatagaatcaaggttcttgcaatcacttgtggcctctggg
gaaatgattggttgtgtggcagcacaatcaattggtgaacctgctactcagatgactctc
aacactttccactacgctggtgtcagtgctaagaacgttactcttggtgtgcctaggtta
agagaaattattaatgttgccaagagaattaagacaccttctttgtccgtgtatttgaaa
cctgaggtttgtaagactaaagagagagccaagaatgtgcagtgtgctttagaatatacc
actctccggagtgtgactcaagccacagaggtgtggtatgatccggacccaatgggtaca
ataatagaagaggatgttgattttgtcaagtcttactatgaaatgcccgatgaagaagtt
gctcttgataaaatctcaccttggttgcttcgcatagaactaaatcgtgaaatgatggtg
gataagaagttgagtatggctgacattgccgagaagatcaaccacgaattcgatggtgat
ttgacatgcatatttaatgatgacaatgctgaaaaacttatacttcgaatccgtattatg
aatgatgaagcacccaagggagacattcaagatgaatctgctgaagatgatgttttctta
aagaaaatagaaagcaacatgctgactgaaatgaccttgcgaggtattccagatatcaat
aaagttttcataaaaaatacgaaaattcagaagtttgacgaaaatgaaggttttaagcct
cacgaggaatggatgcttgataccgaaggtgtcaaccttttagctgtaatgtgccatgaa
gatgttgatgcaaaaaggaccacaagcaaccacttgattgaagttattgaagttctgggt
attgaggcagttcggcggtctctgctggatgaattgcgtgttgtcatttcatttgatggg
tcttatgtcaattacagacacctggctattctttgtgatactatgacttatcggggacat
ttgatggcaattacacgtcatggtatcaacaggaatgaaactggcccaatgatgaggtgc
tcatttgaagagactgttgatattctcctggatgctgcggtatatgctgagactgatcac
ttgaggggtgtaactgaaaatattatgttaggtcaactagcccccataggcaccggtgaa
tgtgccctgttacttaatgatgagatgcttaagaatgctattgagctccagctacctagc
tatatggaaggtcttgattttggcatgacccctggccgttccccaatatctgctactcca
taccacgaaggcttgatgtctccaaattatctgttgagcccaaatctccggctgtctcct
agcaacgatgcacagttttcaccatatgttggtggtatggcattttcgcctacttcatct
cctggttacagtccatcatcaccaggctacagtccatcatcacctggatacagccccact
tcaccagggtacagtcccacatcccctgggtacagccccacatcacctgggtacagtcct
acctctccaacatacagccctagctctccaggatacagtcctacgagcccagcttattca
cctacaagtccatcctactctcccacgtcacccagctacagtcccacatcacccagctac
agcccaacttctcccagctacagccctacatctcccagctatagccccacttcacctgca
tacagcccaacatctccagcatacagccccacttcacctgcctatagtcccacttctcca
tcatatagtccaacatcaccttcctacagtccaacttcgccttcctacagccccacatca
ccctcttacagcccgacatctccctcatatagccctacatcacctgcttacagccctacc
tctcctgggtacagccccacatcaccctcttacagcccaacatcaccatcatatagtcct
acttccccaagttacaatccgcagtctgctaagtatagcccttcattggcatattctccc
agcagtccgaggttgtctccatcaagtccctatagtcccacgtctccaagctacagccca
acgtctccatcatactctccaacatctccatcgtattctccctcgagcccaacatacagt
cccagcagcccatataattctggtaccagcccagactatagcccaagttcaccgcaattt
agtccgagtactggttactcaccaagtcaacctggctactcaccatcctcaaccagccag
tacactccacagacaagtgacaaggatgatacaggcactcagtga
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integrated database retrieval system
