Medicago truncatula (barrel medic): 11439454
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Entry
11439454 CDS
T01716
Name
(RefSeq) zinc finger CCCH domain-containing protein 49
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11439454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11439454
Spliceosome [BR:
mtr03041
]
Complex B
Other components
Prp19-related factors
11439454
Complex C
11439454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_4
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
11439454
NCBI-ProteinID:
XP_003601302
UniProt:
G7J609
LinkDB
All DBs
Position
3:complement(39120409..39124140)
Genome browser
AA seq
492 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYTRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMSSLEVPEDESIKTLYVGGLDARVT
EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQSAKPESDGLDQARQQASVAHSGLFPRAVISQQQNQDQTQGMLYYNNPPPPQQERNYYP
SMDPQRMGALLPSQDGPPGGPSGSGENKPSSEKQQMQHYGRPMMPPPQGQYHHQYYPPYQ
QYPPQYNAAMPPVPPYQQYPPQYNAAMPPPQPPAANHPYQHPMQPGSSQTGSGQAGSAPA
ETGTSTSGSQEQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcgattgctaagggatcacgaagccgatggatgggaacgttccgactttccc
atcatctgcgaatcatgtctaggggatagcccttatgttcgaatgacaaaggctgagtat
gacaaagagtgcaagatttgtacaaggccatttactgtttttagatggagacctggtcgg
gatgcaagatataagaaatcagagatctgccagacttgtagcaaactgaaaaatgtttgt
caagtttgcttgttggatcttgaatacggtcttccggttcaagtccgtgacacggctctg
agcattagctccaatgatgctattcctaaaagtgatgtcaatagggagtattttgctgaa
gagcatgaccgcaaggctagagctggtatagattatgaatcctcttttggtaaagcacgc
ccaaatgacactatcttgaagcttcaaaggacaacaccttattacaaaagaaacagggca
catatttgcagtttctacacaaggggtgagtgtactagaggagccgagtgcccttacaga
catgagatgccagtaactggggaactttctcaacaaaatatcaaagatcgttattatggg
gtgaatgatccggtggctatgaagctacttggtaaggcaggcgagatgagctctctggag
gttcccgaggatgagagcattaaaacactttatgttggtggacttgatgctagggtcact
gaacaggatctgcgtgacaacttttatgcccatggagaaattgaatcagtcaaaatggtt
ctccaacgggcctgtgcttttgtaacctatacaaccagagaaggagcagaaaaggcagct
gaagaactctcaaacaagctggtcattaagggccttaggctaaaattgatgtggggaagg
cctcagtcagcaaaacctgagtccgacggcttggatcaagcaaggcagcaggcttctgtg
gctcatagtggattgttccctcgagcagttatatcacagcagcagaaccaggatcaaacc
caaggaatgctttactataacaatccacctcctcctcagcaggaaaggaactattaccct
tcaatggatccccaaagaatgggtgctcttcttccatctcaagatggtcctcctggtggg
ccttctggatcaggggagaacaaacctagttccgagaagcagcaaatgcaacattatggt
cgtcctatgatgccacctccacaaggccagtatcatcatcagtactatcctccatatcaa
cagtacccaccacaatacaatgctgcaatgcctccagttcccccttatcaacagtaccca
ccacaatacaatgctgcgatgcctccaccccaacctcctgctgcaaaccatccctatcaa
catcctatgcaaccaggttcttcacagacagggtctggacaagctgggtctgcaccagct
gaaactggaacatcgacatcagggtcacaggagcaataa
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