Medicago truncatula (barrel medic): 11440544
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Entry
11440544 CDS
T01716
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11440544
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mtr01009
]
11440544
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11440544
Protein phosphatases and associated proteins [BR:
mtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
11440544
Spliceosome [BR:
mtr03041
]
Common components
Common spliceosomal components
SR proteins
11440544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
NSP2-B_epitope
RRM_occluded
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
11440544
NCBI-ProteinID:
XP_003629227
UniProt:
I3T029
G7LB30
LinkDB
All DBs
Position
8:34087723..34090770
Genome browser
AA seq
270 aa
AA seq
DB search
MADSPPPRNSRSPSPSPWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPVREVNATNP
GNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCI
KHLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGPRGDHRGDHRGDFRGDHRG
DFRGDHRGDYRSDHRGDYRGDYRGDRGRNRGGSGRVDYSDRRSPRRSPYRGGHDHSPQRS
PYVGRSRRERSRSIPRSPYSPDRRYAAGSR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggctgattcacctcctccaaggaattcaaggtctccttcaccttcaccatggaaagct
caatcgagatcaagatcaaggtcaaggtctgttccaagacaaagaccaagatctgactcc
agaggccgtggcagatcaaggtctcgaagtcctgtaagggaggtcaatgctacaaatcct
ggtaatacactatatgttaccggtctatcttcaagggtcaccgacagagacctagaggac
catttttctaaggagggaaaagttgcttcatgttttcttgtggtggagccacgtacccga
atttctcgtggtttcgcttttgttacaatggattcccatgaggatgctgaacgttgtatc
aagcatctcaatcaatcagttttagagggtcgctacatcactgtagaacggtcaagaaga
aagcgtgcaagaactccaacaccagggcactatcttgggctgaaaaatactagagactat
ggccctcgtggtgatcatcgcggtgaccatcgtggtgactttcgtggtgaccatcgtggt
gactttcgtggtgatcatcgtggtgactatcgcagtgatcatcgtggtgactatcgcggt
gactaccgaggtgatcggggaaggaatcgtggtggttctggtcgtgttgattattcagat
cgtaggtctccaaggcgttcaccatatcgcggtggccacgatcattcaccacagcgctca
ccctatgttggaaggtctaggagggagagatctaggtccattcctcgttctccttatagc
ccagacaggaggtatgctgctggatctaggtga
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