Medicago truncatula (barrel medic): 11441582
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Entry
11441582 CDS
T01716
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
11441582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtr03400
]
11441582
Enzymes [BR:
mtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
11441582
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
11441582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
11441582
NCBI-ProteinID:
XP_024632383
LinkDB
All DBs
Position
2:16648316..16663157
Genome browser
AA seq
1169 aa
AA seq
DB search
MTELTKFSVLCSLFTWTQRTKAPAKKRAKFRKFLDNFCTDRNYFPAIRLILPNLDRERGS
YGLKESVLATSLIDALGMAKDSHDALRLVNWRKGGAKTGANAGNFALVAAEVLQLRQGTA
SGGLTIKELNDLLDQLSSSENRGEKTLVLSTLIQKTNALEMKWIIMIILKDLKLGISERS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAADAWK
KLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILD
GEMLVWDTSLNRFAEFGSNQEIAKAARDGLESNRQLCYVAFDILYFGDTSVIHQTLKERH
EILRKVVKPLKGRFEILLPNGGINNHRSSGEPCWSFIAHNAEEVERFFKETIENREEGIV
VKDLSSKWEPSDRSGKWLKLKPDYVHAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAERP
SPNTHPKRFISLCRVGTGLSDDELEAVVTKLKPYFRKYPKTSPPSFYQVTNHSKERPDVW
VDSPEKSIILSVTSDIRTIESEAFAAPYSLRFPRIDRVRYDKDWHECLDVQSFIELVQSG
NGTTQRNTEYGSNKDSKPKRMKSSTRGEKKNMSTVPSHLSQTDVSSVTGGSLMFSNMMFY
FVNVPPSHSLESFHKLVAENGGTFSMNLNNAVTHCVAADSKGFKFEAAKRRGDIIHYTWV
LDCCAQKKLIPLHLKYFLFLSELTKKKLQEDIDEFSDSYYLDLDLGDIKQLLSNINRSED
VSTVDHYRKKYCPKDKWSIFNGCSIYFRTTMPSLKEDWQILLELSSKRFKVEVLMGGGKV
TSNLNSATHVVALFLPSCHTNYEDEIQSSFTSVERKLLGRKRLHIINSKWLEDCLNSCQR
LSEDTYSIKPYGIEESTSEDCEHALAVDAHLIKKDNVEDQNVSISNKGSKQSSVKAASED
SLTLASQAKVGPRKRGRPPGRSITKIKTDTNQARRVRSQIAKKRAKISEYESDESDSLDK
RPYEQEADNVEGSLDFHYVRSQPHETEKIHNVQGGTEGVESSEQNKGIGLEDFKDNQHEN
MFVPEIEMKDADNDQSSQVTEKLEIMTDPVQAMLLDMIPGLSMNKVEQPRNHHVEAEKPP
EISNEEPSSTTKKKKVSFKALAGDFLKDL
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacttacaaaattcagcgtcctatgcagcctctttacatggacacaacgaaca
aaagcaccagcgaagaaacgcgcaaagttccggaagtttctggacaacttctgcactgat
cggaactattttccggccattcgactcattctacctaaccttgatcgtgaacgtggttct
tatgggcttaaagaatctgttcttgctacttctcttattgatgctcttggaatggcgaaa
gactcgcacgatgctcttaggcttgttaattggaggaaaggtggtgccaaaactggtgct
aatgccggtaatttcgcgcttgtcgccgcagaggtgctgcagcttaggcaaggtactgct
tcaggtggactgacaataaaggagttgaatgacttgcttgatcaattgtcttcgagcgaa
aacaggggtgagaagactttggttctttcaacccttatccaaaagacaaatgcgctagaa
atgaagtggatcatcatgataatcctcaaagatttgaagctcggaattagtgaaagaagc
atttttcatgaatttcatccagatgctgaagacttgttcaatgttacgtgtgacttaaaa
ctagtttgtgagaagctaagggatcggaaccaacgtcataagcggcaggatattgaagtt
ggaaaagctgtgcgtcctcaattagctaagagagttgctaacgcagctgacgcatggaag
aagcttcatggtaaggaagtggttgctgagtgcaaatttgacggtgatcgcattcaaatt
cataaaaatggaacggagatacattttttctcaaggaactttattgatcattctgaatat
gctcatgggatgtcagaaatcataattcaaaacattcttgtcgatagatgcatacttgat
ggtgaaatgttggtctgggatacatccttgaatcgatttgctgagtttggctctaatcag
gaaatagccaaggcagcaagggatgggcttgagagtaatagacagttatgctatgtggca
tttgacatcctttattttggagataccagtgtaattcatcaaacattgaaggagcggcat
gagattttacgtaaagttgttaagccattgaaaggtcgttttgaaattttactacctaat
ggtggtatcaacaatcatcggtcttctggtgaaccatgttggtcgtttattgctcacaat
gcggaggaagttgaaagatttttcaaagaaaccattgaaaatagagaggagggaattgta
gtaaaagacctcagctccaaatgggaacctagtgaccgcagtggaaaatggctaaagttg
aagcctgattacgttcatgctggctctgatctggacgtacttatcataggtggctactat
ggttccggacgacatgggggagaggttgctcaattcttggtgggccttgcagagcgtcca
tcaccaaatacacatcccaagcgatttatctccttatgcagagttggtactggactttct
gatgatgagcttgaagcagtagtgaccaaactaaaaccttacttcagaaagtatccaaag
acgagcccgccaagtttttatcaagttactaatcattccaaagaaagacctgatgtgtgg
gtcgatagccctgaaaaatcaattattctgtctgtaaccagtgacatccgaaccatagaa
tcagaggcattcgctgcaccttactctctgagatttcctcggattgacagggtgagatat
gacaaggattggcatgaatgccttgatgtacaatcatttatagaattggtgcaatctggc
aacggtaccacacagaggaatacagaatatgggagcaacaaggacagtaaaccaaaacgc
atgaaatcctctacaaggggagaaaagaaaaacatgtctactgttccctctcatttaagt
cagactgatgtttccagtgttacgggaggttccttaatgttttcaaatatgatgttctac
tttgttaatgtccctccatctcattcgctagagtccttccacaaattagttgctgagaat
gggggcactttctcaatgaatttaaataacgcagtcactcattgtgttgcagcagatagc
aaagggtttaaatttgaagcagcaaaacgtcgtggtgatatcattcattatacttgggta
ttagattgctgtgcacaaaagaagctcatccccttacatctgaagtacttcctctttctt
tctgaactgaccaagaagaagttacaagaagatattgatgagttctcggactcttactac
ttggatctcgaccttggagacatcaaacagctcttaagtaatattaataggtcagaagat
gtcagtactgtcgaccattacaggaaaaaatactgcccaaaggataagtggtctatcttt
aatggatgctccatttatttccgcaccacaatgccatcattgaaagaagattggcaaatt
ctattggaactttcctcgaagagattcaaagttgaagttctcatgggtggtggaaaagtc
acatctaatctcaactccgcaactcatgtggtggccttgttcttaccaagttgtcatacc
aactatgaagacgaaatacagagtagtttcacttcagttgagagaaaacttcttggaaga
aagaggttgcatataattaattccaagtggttagaagattgtttaaacagttgccaaaga
ttatcagaagacacttatagcattaagccctatggaatagaagagtcaacttctgaggat
tgtgaacatgccttggcggtagatgctcatctgatcaaaaaagataatgtagaagaccaa
aacgtatccatctctaacaagggaagtaaacagagtagtgtaaaagctgcttctgaagac
agtttaactttggcatcccaagcgaaggttggaccaaggaaaagaggaagacctccaggc
agaagtattacaaaaataaaaacagacacaaatcaagctcgaagagttcgatcacagatt
gcgaaaaagcgtgccaaaatatctgagtatgaatcagatgaaagtgattctctcgataaa
agaccatacgagcaagaggctgacaatgtagaaggaagtcttgattttcactacgtacgt
tcacaaccacacgagactgagaaaattcataatgtccaaggtggtactgaaggagtagaa
agttctgaacaaaacaagggaatcgggctagaggatttcaaggacaaccaacatgaaaat
atgtttgttcccgaaattgaaatgaaagatgcggacaatgaccaaagtagtcaggtgact
gaaaaacttgaaattatgactgatcctgtacaggcaatgttacttgacatgattcctggc
ctttctatgaacaaagttgagcaacctaggaatcatcatgtcgaggcagagaagccacca
gaaatctctaatgaagagccttcttcaactacaaagaaaaagaaagttagcttcaaggct
ctcgctggtgattttctaaaggatttgtag
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integrated database retrieval system
