Medicago truncatula (barrel medic): 11443624
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Entry
11443624 CDS
T01716
Name
(RefSeq) pre-mRNA-processing protein 40C isoform X1
KO
K12824
transcription elongation regulator 1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11443624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11443624
Spliceosome [BR:
mtr03041
]
Complex A
U1 snRNP components
U1 related factors
11443624
Complex B
11443624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Glyco_hyd_101C
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
11443624
NCBI-ProteinID:
XP_003607201
UniProt:
G7JNF7
LinkDB
All DBs
Position
4:36319170..36333337
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AA seq
959 aa
AA seq
DB search
MSQPPLSAAETTPTSMPNSSSSSSSTPASSPAPPVSYAPHQNVNSSANSQQQQQASHSGM
NPNSVVNPPFHTHTPRPAAPSFSYNFPQSAPPAFTGNQHGQSNTNMPDSVTQDFSKVPSA
SINLHSAPAPTSISAMAPRSDPNYRPTTLWMPTAPTFPIHPVMPGTPGTPGPPGLTKPVM
IPSNPAAPSTTGFPSAAVPRQNMPTASDPNASHRGGLPYPPIPSMVAPPQGYWLQPPQMS
GVLRPPFHQYPAAFPGPFPFPARGGALPAVPVPDSQPPGVTPVGAASISAPSSSNHLLRG
TSGVQTEVISAHTDDKHKLNATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQSTYD
KPAGFKGEAHQVSVQPTPVSMVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEVAEL
KKKQDSDVTKDHPTPVPNTNVLSERGSGMVALNAPAITTGGRDAVASKPFIVQSSPSALD
LIKKKLQESGAPVTSSSIPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGDANV
SDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSAR
RSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKKWGNDPRF
EALDRKEREHLLNERVLPLKKATEEKAQAMRDAAADSFKSMLKEQGEITFNSRWSRVKES
LRDDPRYKSVKHEDRELLFNEYISELKAVEHAAERETRAKREEQDKLRERERELRKRKER
EEHEMERVRLKIRRKEAVTSFQALLVERIKDPMASWTESKPKLEKDPQGRATNSDLDSAD
MEKLFRDHVKMLQERRARDFRALLAEFLTSEAASQETDDGKTVLNSWSTAKRLIKSDPRY
NKVPSEDREALWRRYAEDMIRRQKSSHDSKEEKHTDARGRKSLESSKNPLESGRSHERR
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaccaccactctctgctgccgaaacaacgcctacttctatgcctaattcttct
tcttcttcttcttcaactcctgcatcatcaccggcgccaccagtctcttacgcccctcat
caaaatgttaactcttctgcgaattctcagcagcaacagcaggcgtcacattctgggatg
aaccctaattctgtcgtcaaccctccatttcatactcacaccccacgtcccgctgcccct
tcattttcatataattttccccaaagtgcgccgccagcttttactggcaaccaacatggg
caatctaacactaacatgcctgattccgtcacacaagattttagtaaagtgccatctgca
tcaattaacttacattcggctcctgctcctacctctatatccgcaatggcgcctcgctct
gaccctaactatcgcccaactactttatggatgccaactgccccaacttttcccatccat
cctgtaatgcctggaactcctggtactcctggtccccctggattaacaaaacctgtgatg
ataccctccaatccagctgctccatctacaacaggttttccctcagctgcagtaccgaga
caaaatatgccaaccgcatcagatcctaatgcctcacatagaggaggcttaccctatcca
cccataccttccatggttgctccacctcagggatattggttacagcctccacagatgagt
ggtgtacttaggccaccatttcatcaatatcctgctgcttttcctggcccctttccattt
ccagcacgtggtggtgcactccctgctgttccagtacctgattctcaacctcctggtgtt
actcctgttggtgctgccagcatttctgcaccctcttcttccaatcatctgctgagggga
acatctggtgtgcagacagaagtaatttcagcacatactgatgacaagcacaaattaaat
gccactgtgacacagaatgaggatgccgctaatgatcagctagatgcttggactgcccac
aagactgaagcagggattgtatactattataatgctttgacagggcaatcaacatatgat
aaacctgctggctttaaaggggaggctcaccaagtttctgtgcagcccactccagtttca
atggtagatttgcctggtactgattggcagttggtctctactagtgatgggaaaaaatat
tactataacaatcgaaccaagacaagctgctggcaaattcccaatgaggtggcggaattg
aaaaaaaagcaggacagtgatgttacaaaagatcatccaacgcctgttccaaatactaat
gtattgtctgagagagggtctggaatggttgctctgaatgctcctgctattaccactggt
ggtcgtgatgctgtagcttctaagccctttatcgtacagagctcaccatcggcactggat
ttgatcaagaagaagttgcaggaatcaggagcacctgttacatcctcttctattcctact
ccatcagtgcaaccaggatccgaatcaaatggttcaaaagcaaccgactctacagccaag
agcctgcaaaatgataatagcaaagacaaacaaaaagatgctaatggtgatgctaatgtc
tctgatacatcttcagattcagaagacgaggatagtgggccttcaaaggaggagtgcata
aatcaatttaaggagatgcttaaggagcgtggcgtggcaccattctcaaagtgggagaaa
gaactaccaaaaatagtatttgatcctcgttttaaggctatccctagctattctgctagg
agatccttgtttgaacattatgttaaaaatcgcgcggaagaagaacgcaaggaaaaacgt
gctgcacaaaaggctgcaattgaggggtttaagcagctactagacgaagcctcagaggat
attgatgacaagaccgactctcacacttttcgaaagaaatggggaaatgatccacggttt
gaggcattggaccgcaaggaacgggagcatcttctgaacgaaagagtgcttcctttaaag
aaagccactgaagaaaaagctcaagcaatgcgtgatgctgctgctgacagttttaagtca
atgcttaaagaacaaggagaaataactttcaactctcgctggtccagggttaaagagagt
ttaagagatgacccgagatataaatctgtgaaacatgaggatagggaattattgttcaat
gagtatatttccgagttgaaagctgttgaacatgcagcagaacgagagaccagagctaaa
agggaggagcaggacaagctgcgggagagggagcgggagctgcgtaaacggaaggaaaga
gaagaacatgaaatggaaagggtacgcctaaaaattcgtaggaaggaggcagttacttct
tttcaagctttacttgttgagagaatcaaagaccctatggcatcatggacagaatcgaag
cctaaactagaaaaagatcctcaagggcgtgcaaccaattctgatcttgattcagctgac
atggaaaaactcttccgggatcatgtaaagatgcttcaggaacgtcgtgctcgcgatttt
agagctcttctagctgaattcttgacttctgaagccgcgtctcaggaaactgacgatggg
aaaacagtgcttaattcatggtctacagcaaagcgtcttataaaatctgatccaagatat
aacaaggttccaagtgaagatagagaagccttgtggcgccggtatgcagaggatatgatt
cggcggcaaaaatcatctcatgattcaaaggaagaaaaacatacagatgccagaggtaga
aagtctctagagtcttccaaaaatccattggaatcagggagatcgcatgagagaagataa
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