Medicago truncatula (barrel medic): 120577927
Help
Entry
120577927 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC120577927
Organism
mtr
Medicago truncatula (barrel medic)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RT_RNaseH
RT_RNaseH_2
RVT_3
RVT_1
Retrotrans_gag
Integrase_H2C2
RNase_H
Asp_protease_2
gag-asp_proteas
rve
Ty3_capsid
rve_3
DUF5712
Motif
Other DBs
NCBI-GeneID:
120577927
NCBI-ProteinID:
XP_039685897
LinkDB
All DBs
Position
1:8584279..8590525
Genome browser
AA seq
1846 aa
AA seq
DB search
MYIRKMIAYKNNVPLLIHCFQDSLTGPAHTWFMGLKGVTTFEQLAEAFMQQYKYNTYLAP
SRKELQSLTQKDKESFKEYAQRFIQKAAQIRPPLDERELSDLFYETLSPCYSEKMIVCAS
QKFTDLVETGMRIEEWARKGAAVSGSSSGGSSGVSSNGNKKFGNGYPKRNAQEVGMVAHG
GPQPVYPNHPFVANITPQMTAPQNPNYQSPRPQGPAPYYPPLYQPLYNLQQFPQQPYYPQ
QPYQQRPQQQPRPQAPHNQQNQRQQFDPLPMTYGALLPSLLAQNLVQTIPPPRIPDPLPR
WYRPDLHCIYHQGAPGHDVERCFALKKEVQKLINSKELTFTDPDAVAQNNPLPTHGPAVN
MIQDDQEEARILSVCDIKTPLVPIHVKMCRATLFNHNHEACDICSMDPRGCIQVQNDVQG
LLNRRELVVTREPESKDVCVVTPVFRARRPLVINPNSTKPVGTPLVICVPRPTPTTAQKA
VPYKYEGTILEPGSETTSPVAVDNIAENSRILRSGRILPTVGPKSVSVPVDEPVKERNAG
KGKAGEQAKEFDFEDADEVLKLIKKSEYRVVDQLLQTPAKISIMALLASSGAHRDALRKV
LDQAFVDYDVTLGQFESIVGNVTACNSLTFSDEDLPAEGNKHNQALLISVLCRTDSLSNV
LIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQV
TFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLITVSGESAFLISNLSAFS
VIGGSGSDGPSFQGFSAEESVGKIETCMASLKDARRVIQEGKTEGWGQLVELPENKRKEG
IGFLNSKPGMFDPTRGSFHSAGFIHDSPETNAILDDAPGGVTPVFVTPGGACCNWIAVDI
PSVTPRSKLNISESVEHSDLMLSPNFEVPVYEAVVEEDEEVPNEIKWMLEQERKTIQPHQ
EEIEIINLGTEEDKKEIKIGASLDVSVKKRVIELIREYVDIFAWSYKDMPGLDPDVVEHR
LPLKPECPPIDAGFLVTSEYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDNFPLPHI
DVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATY
QRGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKL
LRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDET
GKKEHAIYYLSKKFTDCESRYSVLEKTCCALTWAAKRLRHYMINHTTWLISKMDPIKYIF
EKPALTGRIARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPIEDYQPIKFDFPDEEVMY
LKAKDCDEPVFGEGPDPESEWGLIFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFDCTN
NIAEYEACIMGIEEAIDLRIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRLLTF
FNKVELHHVPRDENQMADALATLSSMINVNGHNTVPVINVQFLDRPAYVFVAEAIDDDKP
WYHDIQVFLQTQKYPPGASNKDKKTLRKLSSRFFLNEDVLYKRNFDGVLLRCVDKHEAEK
LMREIHEGSFGTHSCGHAMSKKILRAGYYWITMHGDCYNHAKRCHKCQIYADKIHIPPSM
LNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKIITDNGTNLNNNMMKELCD
DFKIQHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTST
GATPFSLVYGMEAVLPVEVEIPSLRVLMEAELSEAEWCQSSYISQG
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgtatattaggaagatgatagcttacaagaataatgttcccttactcattcactgcttc
caggatagtttgactggtccggcacatacctggttcatggggttgaaaggagtcactact
tttgaacagttggctgaggccttcatgcaacagtacaaatataatacctatctggcgcca
agtcgcaaagagttgcagtccttaacccagaaagataaagaatcgttcaaagaatacgca
caacgcttcattcaaaaagctgctcagattcgtcctcccttggatgagagggaactttca
gatttgttctatgaaaccctgagcccttgttattcagaaaagatgattgtctgtgcatca
cagaagttcactgacttggtggaaacaggaatgcgtatcgaggagtgggctcgtaaggga
gcagctgtttcgggaagttcttcaggtggttcttcaggggtttcgtccaatggtaataag
aaatttgggaatggttacccaaagaggaatgctcaagaggttggcatggtggctcatgga
ggacctcagcccgtgtaccctaatcacccctttgttgccaacatcaccccacaaatgacc
gcaccccagaacccaaactatcaatcacccagacctcaaggacctgcaccatattatccc
ccattataccaaccactatacaacctacaacaattccctcaacaaccatattacccccaa
caaccataccaacaaagaccacagcaacaaccccgtcctcaggctcctcacaatcagcag
aatcaaaggcaacaatttgaccccttgccaatgacctatggagcattgctcccttcttta
cttgcacagaatctggtccaaacaataccacctcctcgcattccagaccctctcccacgc
tggtaccgtccggaccttcattgtatttaccatcaaggggcaccaggccatgatgtggag
cgttgttttgctcttaagaaagaggttcagaaactgataaatagtaaagagttaaccttc
accgaccctgatgctgtagctcagaacaatcctctgcctactcatgggcctgctgttaat
atgattcaagacgatcaggaagaggctcgcattctctccgtatgtgatatcaagactcct
ctggtaccgatacatgtgaaaatgtgtagagcaactctcttcaaccacaatcatgaagct
tgtgacatatgttcgatggatcctcgtggatgtatacaagtccagaatgatgtgcagggt
ctcctaaatagaagggaacttgtggttacaagggaacccgagagcaaggacgtctgtgtt
gtcactccggtattcagagccaggaggccgctggtgataaaccctaacagtacaaagccc
gttggtactcccttggtaatctgtgtgcctaggcccacgcctactactgctcagaaagct
gtaccctacaagtatgaaggcacaattctagagcccggaagtgagacaacttcacctgtt
gctgtggataatatcgcagagaatagccggattttgaggagtggccgcatccttcctacg
gtgggtccgaagagtgttagtgttccggtcgatgagccagtaaaagagcgaaacgccggt
aaaggtaaagctggggagcaggccaaagagtttgactttgaggatgccgatgaagtcttg
aagctgatcaagaagagtgaatacagggtggtggaccagctgttacaaactcctgcgaag
atttccatcatggccctattggcaagttctggtgctcatcgggatgccctgaggaaagta
ctagaccaggcatttgtggattatgatgtaactctgggtcaattcgaaagcatcgtgggg
aatgtgaccgcgtgtaacagtctgactttcagtgatgaagatctcccggcggaggggaat
aagcataatcaagcattactcatctctgtactttgcagaacggactcgttatccaacgtc
ctgatagataccggctctgcacttaatgtgatgcccaagtcaactctcgaccaattggcg
tactccgaggctcctttgagacttagcaaggtgacggtgagggccttcgatggaactagg
agatcggtgtatggtgaggtagatttgccaatttcggtcggcccacatgaatttcaggtt
actttccaagtcatggaaatccaggcttctttcagctgtttgctcggcagaccatggatt
catgacgctggggctgtgacatctactctccatcagaaattgaagtttgtaagtcgtgga
aagttgatcactgtgagtggcgaatcggcctttttaatcagcaatttgtctgctttctcc
gtcatcggtggtagtggttcagacgggccatcattccaagggttctctgccgaagaaagt
gtcggtaagattgagacttgtatggcttcgttgaaggatgcccggagagtaattcaggaa
ggcaaaaccgaaggctggggtcagctagtggagttgccagaaaacaagcgtaaagaggga
attggtttccttaacagtaagcctgggatgttcgaccccaccagaggttctttccacagt
gctggtttcattcatgattcgccagagaccaatgcaattttggatgatgcacctggagga
gtgacaccggtctttgtgacgcctggaggagcttgctgcaactggattgctgttgacatt
ccttctgtgacaccccgctctaaactgaacataagtgaatccgttgaacacagtgacctc
atgctttctcccaactttgaggtcccggtttacgaggctgtggtagaggaggatgaagag
gtcccaaatgagattaaatggatgttggaacaagaaaggaagacaattcaacctcatcag
gaagagatagaaatcatcaatctgggtactgaggaagacaagaaagaaatcaagattggg
gcatcgttggatgtatctgtcaagaaaagagtaattgagcttatcagagaatatgttgat
atattcgcatggtcatacaaggacatgccgggtctagatcctgatgtcgttgaacacaga
ctgcctttgaagcctgagtgtcctccgattgatgcaggtttcctagtcacatcagagtat
cctcaatggttggccaacatagtgcctgttccaaagaaagatggcaaagtcagaatgtgt
gttgattatcgggacttgaacaaggctagtccgaaggataattttcctttacctcacatt
gacgtattggttgataatactgctaagtgcaaggttttctccttcatggacggtttttcc
ggctacaatcagatcaggatggctcctgaggatagagaaaagacgtctttcatcacgccc
tggggtgctttctgctatgtggtgatgccatttggtttgataaatgctggtgccacttac
caaaggggctttatcgtcagtcaaaagggtattgaagttgatcccgacaaggtcagagcc
atcagagaaatgcctgttccaaagacagagaagcaagttagaggttttcttggtagactc
aattatatctccagatttatctctcacatgaccgccacatgtggaccaattttcaagtta
ctccgcaaggatcaaggggtgaagtggaatgatgattgtcagaaggcttttgatcaaatc
aaagaatatctgttagaacctccaattcttgttcctccagttgacggaagacctttgatc
atgtatttaacagtactggaagattccatgggctgtgttttgggtcaacaagatgaaacc
ggaaagaaagagcacgctatctactatttgagtaagaagttcactgattgtgagtcccga
tattctgtacttgagaaaacttgttgtgctttaacttgggctgccaagcgtctccgtcat
tatatgattaatcatacaacttggttgatatccaagatggatcctatcaagtacatattt
gagaagccagctttaactggaaggattgctcgctggcagatgttattgtccgagtatgat
atcgagtatcgcactcagaaagcagtcaaaggtagcatcttggcagaacatttggctcat
caaccaatcgaagactatcaaccaatcaaattcgacttcccagatgaagaggttatgtat
ctaaaagcaaaagattgtgacgaaccagtgttcggtgaaggtcctgatcctgaatccgaa
tggggtttgatatttgatggagctgttaatgtctatggaagtggaattggtgcggtactc
attacccctaagggtactcacatcccttttactgcgaggttacgttttgattgcacaaac
aacatcgcagagtacgaagcttgcatcatgggtatcgaggaagccatcgatttgaggatc
aagaaaattgtcatttatggagattccgctcttgtgattaaccagatcaaaggagaatgg
gaaactcgtcatcctggattgattccctacagagattatgcaaggcgtttgctgactttc
ttcaacaaagtagagttacatcatgtgccccgcgatgagaatcaaatggcagatgcttta
gctactctatcctcaatgatcaatgtgaatggtcacaatactgtgccagtaatcaatgtc
caatttctcgaccgacctgcttatgtgtttgtagctgaagcaattgatgatgacaagcca
tggtatcatgatatccaagttttccttcaaactcaaaagtacccacctggggcatccaac
aaggacaagaaaacattgagaaaattgtcaagccgtttcttccttaacgaagacgttttg
tataaaaggaactttgatggggtcctacttagatgtgtggataagcatgaagcagaaaaa
ttgatgcgcgagattcatgaaggctcttttggaactcactcatgcggtcacgccatgtcg
aagaagatattgagggctgggtactactggataacaatgcacggcgattgctacaatcac
gccaagagatgccataagtgtcaaatatatgctgacaagattcatataccaccatctatg
ctcaatgttatctcttccccgtggcctttctccatgtggggcattgacatgattggtcgg
attgagccaaaagcttccaatggacatcgtttcatattagtggctatcgattatttcacc
aaaatcatcacagacaatggcacaaatctgaataacaacatgatgaaagagttgtgcgat
gacttcaagattcaacatcacaattcttctccttacagaccacagatgaatggggcagtt
gaagctgcaaacaagaacatcaagaagatcatacagaagatggtagttacttacaaggac
tggcatgaaatgttaccctatgctctgtatggataccgtacctcagtgcgaacctcgaca
ggggcaacccctttctctttggtatacggtatggaggctgtactacctgtagaggttgag
attccttctttaagagtcttgatggaagctgaattgtctgaagctgaatggtgccagagc
agttatatcagtcaaggatga
DBGET
integrated database retrieval system
