Medicago truncatula (barrel medic): 120579505
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Entry
120579505 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC120579505
Organism
mtr
Medicago truncatula (barrel medic)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH
RT_RNaseH_2
rve
Retrotrans_gag
Integrase_H2C2
RVT_3
Asp_protease_2
Gag_p24_C
Motif
Other DBs
NCBI-GeneID:
120579505
NCBI-ProteinID:
XP_039687843
LinkDB
All DBs
Position
3:13928013..13934519
Genome browser
AA seq
2020 aa
AA seq
DB search
MYVRRMTAHRKNEPLLIYCFQDSLAGPALTWYMNLKGITTFEELANAFIQQYKYNSYLAP
NRKELQAMTQGDKESFKEYAQRFIQKSAQIRPPLEEREVADLFYETLSPFYSEKMLLCAS
QKFTDMVDAGVRIEEWVRKGRGSKDGASSGGYSGSLTSGSSNGNRKFGNGYPKKNPQEVG
MVAHGGSQPVYPNYPYVANIPSPISDPQNPNYQPQRPQAHRPYYPPLYQSQPYQPQPFYQ
QPYYPFPPQQQQPRRPRPPPQQQQPRQPRPPRNQFPPIPMLFGDLLPSLLARGLVQVKPR
PLVPNPLPHWYRPDLTCEFHQGAPGHDIEHCYPLKDAVQRLIHNKDLSFNDPDPVAPNNP
LPPHGPTVNMIENYQEDGLVTNAQDVRTPLVPMHVKMCNIGMFSHDHINCEVCSTDPHGC
IQVQNDVQGLMDQGELVVTREDKNISVVIPVFKDRTKPIGVVTPIFKDNAKTVVDPLAIC
IEDGKGVLLSPSTSVDNIAESSQILRSGRILPAVVQAKNKAPMIESVPIPDPSKGKSVGQ
PSGTDNDEILKLIKKSDYKIVDQLLQTPSKISIMSLLTSSDAHREALMKVLNQAYVDHDV
TLDQFGSIVGNVTACNNLSFSEEDLPVEGKNHNMAFHISVICKTDYLSNVLIDNGSSLNV
MAKTTFDKLTYSDGFIRPSCVSVRAFDGSRKTVWGEIDLPITIGPQEFKVTFQIMDIQAS
YSCLLGRPWIHEAGAVTSTLHQKLKFVSHGKLVTVSGESALLVSHLSSFSFIGGESSDGT
SFQGLSVESGTTKGETCMASLRDAQRVIQEGKAEGWGQLVQLPENKRKEGLGFSGNKQVV
FDPTRGTFHSAGFINTPPETNAILEDQSEQVAPDFVTPDGNCCNWIAFDIPSAIPFSKLN
ISEPVERSDPMLPPNLEFPVYEAWVEEDEEIPNELRWMLEQERKAIQPHKEEIESINLGT
EEDKKEIKIEASLEASVKNRIIELLREYDDIFAWSYKDMPGLDPDVVEHRLPLKPECPPV
KQKLRRSHPDMALKIKEEVRKQIDAGFLITSEYPQWLANIVPVPKKDGKVRMCVDYRDLN
KASPKDDFALPHIDVLVDSTARCKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGAFCYL
VMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTKEEHAEYLLKMFQRLRKY
KLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKQVRGFLGRLNYI
SRFISHMTATCGPIFKLLRKDQGIVWTEDCQKAFDSIKGYLLEPPILVPPVEGRPLIMYL
TVLDDSMGCVLGQQDETGKKEHAIYYLSKKFTDCESRYSMLEKTCCALAWAAKRLRHYMV
YHTTWLISKMDPIKYLFEKPALTGRIARWQMLLSEYDIVYRTQKAIKGSVLADHLAHQPI
EDYQPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSKWGLIFDGAVNVFGNGIGAVILTP
KGTHIPFTARLRFDCTNNIAEYEIKGKWETHHAGMIPYRDYARRLLTFFNKVELHHIPRD
ENRMADALATLSSMIKVNRGNDVPLISVKFLDRPAYVFVAEVVFDDKPWFHDIKVFLQTQ
EYPPGASRKDKRTLRRLSGNFFLSGDVLYKRNFDSVLLRCVDRREADLLMHEIHEGSFGT
HSSGYSMAKKALRAGYYWITMHADCHHYAKKCHKCQIYADKIHVPPSMLNVISSPWPFSM
WGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNIICRYGVPN
KIITDNGTNLNNKMMKELCDGFKIEHHNSSPYRPQMNGAVEAANKNIKKIVQKMVVTYKD
WHEMFPYALYGYHTSVRTSTGATPLSLVYGTEAILPVEVEIPSLRVLMEAELSEAEWCQN
RNDQLNFIEEKRMAALCHGQLYQTRMKQAFDKKVRPREFKEGDLVVKSIKSFQPDPRGKW
TPNYEGPYVVKRAFSGGALILTTMDGEELPRPVNSDAVKK
NT seq
6060 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtcaggaggatgacggctcataggaagaatgaacctctactcatctactgtttt
caggacagtttggctggtccagcactcacgtggtatatgaatttgaagggtatcactact
tttgaggaattggctaatgccttcatccagcagtataaatataactcttatctggcccct
aaccggaaagagctgcaagctatgactcagggtgataaggaatctttcaaagagtatgcc
cagcgcttcattcagaaatctgctcaaattcgtccgcctttggaagaaagagaagtggct
gatctgttctatgagactctgagccctttctactcagagaagatgcttctttgtgcttca
cagaagtttaccgacatggtagacgcgggtgttcgtattgaagaatgggtccgtaaggga
cggggtagtaaagatggtgcctcttcaggtggttattcaggaagtttgacaagtgggtca
tccaatggtaataggaagttcggaaatgggtacccaaagaagaatcctcaagaggtcggc
atggtggctcatggcggatcccaacctgtataccccaactacccctatgttgctaatatt
ccatcacccatctcagatccacaaaacccaaactatcaaccacaaaggcctcaagcccac
cgtccatattatccaccactatatcaatcacaaccttatcagccacaaccgttttaccaa
caaccatactatccctttccaccacaacaacaacagcctcgtcggcctcgtcctccacca
caacaacaacagcctcgtcagcctcgccctccaagaaatcaattccctcctatccctatg
ttgtttggagacttgttaccttccctacttgctaggggtcttgttcaggttaaaccacgt
cccctggtgccgaaccctttacctcattggtatcgcccagaccttacttgtgaattccat
caaggggcaccagggcacgacattgagcactgttaccctctcaaagacgcagtccaaaga
ttgattcacaacaaggacttatctttcaatgaccctgaccctgttgctccaaacaaccct
ctgccacctcatgggccgaccgttaacatgattgagaattatcaggaagatggtctcgtc
accaacgctcaagatgtcagaaccccgttggttccaatgcatgtgaagatgtgtaacata
ggtatgtttagccacgatcatatcaattgtgaggtgtgttctacggatccccacgggtgc
attcaagttcaaaatgatgtacaagggttaatggatcaaggagagctggttgtcacaaga
gaagataagaacatttccgttgtaattcctgtgtttaaggataggacgaaaccaattggt
gttgttactccgatattcaaagacaatgccaagacagttgtcgatcctctggcaatttgc
atagaggatggtaaaggggtacttttgagtccttcaacttcggtagataacattgctgag
agtagtcaaattctgagaagtggacgtattcttccggctgttgtacaagcaaagaacaaa
gctccgatgatagaatcagtgccaataccagatcctagcaagggtaaaagtgtgggtcaa
cctagtggaactgacaacgatgaaattttgaaactaatcaagaaaagtgattataagata
gtggatcagttattgcaaactccatccaagatttctatcatgtcactattgacaagttct
gatgctcatagggaggccttgatgaaagtgttgaatcaggcctacgtagaccatgatgtg
actttggatcaatttgggagcattgttggaaatgtgacggcatgcaacaatctgagtttc
agtgaggaagacctcccggtggaggggaaaaatcataacatggccttccatatctctgtt
atatgcaaaacagattatctatccaatgtcttgatagacaacggttcttccctcaatgtg
atggcgaagacaaccttcgataaattgacatattcagacggatttatcaggcccagttgc
gtgtcagtaagggcatttgatggatccaggaagacggtgtggggagaaatagatttacct
atcactattgggccccaagagtttaaagttacattccagataatggatattcaagcttcc
tacagctgtttacttggtagaccatggattcatgaagcaggggcagtaacatccactctt
caccaaaagctaaagtttgtgagtcatggaaagcttgttacagtgagtggagaatcagct
cttttggttagccatttgtcgtccttttccttcattggtggtgaaagttcggatggaacg
tcattccaagggctctcggttgaaagcggtactacaaagggtgaaacatgcatggcctct
ctaagggatgctcagagagtaattcaagaaggaaaagcggaaggctgggggcaattagta
cagttgcccgagaacaagcgcaaagaaggtctgggtttctctggcaataagcaagtggtg
ttcgacccaactaggggcacttttcacagtgccggattcattaatacaccacctgagact
aatgcaattttggaagatcaatcagaacaggtggcacctgactttgtgactcctgatgga
aactgctgcaactggattgcatttgacatcccttctgcgatacctttttctaaactgaac
ataagtgagcccgttgaacgtagtgaccctatgcttccgcccaacttagagttccctgtt
tatgaggcttgggtagaggaggatgaagagattcctaatgagctcagatggatgttagag
caagaaagaaaagccattcagcctcataaggaagaaatagaatcgatcaacctgggtact
gaggaagataagaaagagattaagattgaagcgtcattagaggcatctgtcaagaatagg
ataattgagcttctcagagagtatgatgatatatttgcgtggtcctacaaagacatgccg
gggttagaccctgatgttgttgaacatcgtttgcctctaaagcccgagtgtcctccagtc
aagcagaagttaagaagatctcatccagatatggctctcaagatcaaagaggaagtgcga
aagcaaattgacgcaggtttcttgattacctctgaatatcctcaatggttggctaacata
gtgcccgttccgaagaaagatggtaaggtcagaatgtgtgttgactatcgggatttgaac
aaagctagtccgaaggatgatttcgccttacctcacattgatgtattggttgatagtact
gctagatgcaaggtgttctccttcatggatggattttctgggtataaccaaatcaagatg
gctccggaagatagagaaaagacgtctttcatcacgccatggggcgctttctgctactta
gtaatgccatttggattgataaatgctggcgccacttaccagagaggcatgactaaaata
ttccatgatatgatacataaagagattgaagtatatgtggatgatatgattgtcaagtca
ggcactaaagaagaacatgctgagtatttgttaaagatgtttcaacggttgagaaagtac
aaactccggttgaatcctaacaaatgtaccttcggtgttagatctggcaagctcttgggt
tttatcgttagtcagaaaggtattgaagtagatcccgacaaagtcaaagctatcagggaa
atgccggctccaaggacagagaaacaagttagaggttttttgggaagattgaactacatc
tccagattcatctcccatatgactgccacatgtggaccgatattcaagttactccgtaaa
gatcagggcatcgtttggacggaagattgccagaaagcttttgatagcatcaaagggtat
ttgttagaacctccgattcttgtccctccagttgaaggaaggcctttgatcatgtacttg
actgtgttggatgattctatgggctgcgtgcttggtcaacaagacgaaactggaaagaaa
gagcatgccatttactacttgagtaagaagtttactgattgtgagtcccgatattctatg
cttgagaaaacttgttgcgctttggcatgggccgctaagcgtctccgtcactacatggtt
taccacactacttggttgatatccaaaatggatccgatcaagtacctttttgagaagccg
gcattaacaggaagaattgctcgttggcagatgttattgtctgaatatgatattgtgtat
cgcactcagaaagccatcaagggtagtgttcttgctgaccatttggctcatcaaccaatt
gaagactatcagcctatcaagtttgatttcccagatgaagagatcatgtatttaaagatg
aaagattgtgatgaaccgttgtttggtgaaggtcctgatccagactctaagtggggtttg
atttttgatggagccgtcaatgtctttggtaatgggataggggcagttatccttactcct
aaaggtactcacatccctttcactgcaagactccggtttgattgcacgaacaatattgca
gaatatgaaatcaaaggaaaatgggaaactcaccatgctggaatgattccttacagagac
tatgcaagacgtttattgactttcttcaacaaggtggagttgcaccacattcctcgggat
gagaatcgaatggcagatgccttagcaactttatcttcaatgatcaaggtgaatcgaggc
aacgacgtgcctctaatcagtgtcaagttccttgataggcccgcttatgtgtttgtagcc
gaagtagttttcgatgataagccgtggtttcatgatattaaagtgtttcttcaaactcaa
gagtaccctcctggggcatcccgtaaagataagagaactctaagaagactgtctggcaat
ttcttcctgagtggagacgtcttgtacaaaagaaactttgattcagttttgctcagatgt
gtggaccgacgtgaagcagatttattaatgcatgagatacacgaaggctcgttcgggact
cattctagtggatattcaatggctaagaaggcattgagagcaggctactactggataacg
atgcatgctgactgtcatcattatgccaagaagtgccacaagtgccaaatttatgctgat
aagattcatgttccaccgtctatgctcaatgttatctcttctccatggccgttttctatg
tggggcattgatatgattggtcgaatcgaaccaaaagcttccaatggacatcgtttcata
ctagtggctattgactacttcaccaaatgggtcgaagcggcatcttatgctaatgtgacc
aaacaagtagtagtccgatttatcaagaacaatatcatatgccgttatggcgttcccaac
aaaatcatcacggataatggcacgaatttgaacaataaaatgatgaaggaattatgtgat
ggtttcaagatcgagcatcataactcgtctccttatagacctcagatgaatggtgcggtc
gaagctgcaaacaagaatattaagaagatcgtgcagaagatggtggttacctataaagac
tggcatgagatgtttccctacgctttgtatggttatcatacttcagtgcgtacttcaaca
ggggcaacccctctttctttggtatatgggacggaagcgatacttccggtagaagttgaa
atcccgtcattgagggtcttgatggaagctgagctgtcagaggctgaatggtgtcaaaat
aggaatgatcagttgaatttcattgaggaaaaacgcatggctgctttatgtcatggacag
ctatatcagacaaggatgaaacaagcgttcgataaaaaggttcgtccccgtgaatttaaa
gaaggtgacctggtggtcaagagtatcaagtctttccaaccagaccccaggggaaagtgg
acacctaattatgaaggtccctatgtggtgaagagagctttttctggtggtgctttaatt
cttacaactatggatggagaggagttacctcgtcctgtgaattctgatgcagtcaagaaa
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