Medicago truncatula (barrel medic): 120580631
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Entry
120580631 CDS
T01716
Name
(RefSeq) uncharacterized protein LOC120580631
Organism
mtr
Medicago truncatula (barrel medic)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
Retrotrans_gag
Ty3_capsid
RT_RNaseH_2
Asp_protease_2
gag-asp_proteas
Caskin-Pro-rich
Gag_p24_C
Motif
Other DBs
NCBI-GeneID:
120580631
NCBI-ProteinID:
XP_039690590
LinkDB
All DBs
Position
5:17877319..17882326
Genome browser
AA seq
1580 aa
AA seq
DB search
MDYLEQENRVLREEMTVMQTRMDEMAELIKTMAETQTQAQAQIQAQAQALAQAQTQAQAV
TEAQARSQAPPPPPPVRTQAEASSSWTLCADTPTRSAPQRSAPWFPPFTAGEIFRPITCE
AQMPTHQYTAQVPLPAMRVTPATMTYSAPVIHTIPQTEEPIFHSGNVEAYEEVSDLQEKY
DELRRDMKALRDKGKFGKTAYDLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYVRRM
PAYAQDDQILIYYFQESLTGPASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSD
LQAMTQGDKETFKEYAQRWRDTAAQVSPRIEEKEMTKLFLKTLNHFYYKKMVGSTPKSFA
EMVGMGVQLEEGVREGRLVKNATPANGTKKTGNHFPRKKEQEVGMVTHGMPQQTYPAYQH
IAAITPTSHPFQQTNNHSQIPQYPQIPQYPQIPQYPQFPQNPSPQNTQQQNFQQQPYQQF
PYQQYPQQNFQQQPYQQRPQQPRPPRMPINPIPVTYAELLPGLLKKNLVQTRTAPPIPEK
LPSWYRLDQTCDFHEGGRGHNIETCYAFKSTVQRLINDGKITFTDSAPNVQTNPLPNHGA
ATVNMIEDCQKTRPILNVQHIRTPLVPLHAKLCKVDLFEHDHDLCEICLMNSGGCQKVRN
DIQGLLNRGELVVERRCDDVCVITPEGPLEVFYDSRKSTITPLVICLPGPLPYASEKAIP
YKYNATMIEEGREVPIPPLSSVDNIVEDSRVLRNGRVVPIVFPKKIDATINKEVRTKDAG
IAKEVDQPNGAGTSAEFDEILKLIKKSEYKVVDQLMQTPSKISIMSLLLNSEAHKDALMK
VLEQAFVDYDVTVGQFGGIVGNITACNNLSFSDEELPAEGRNHNRALHISVNCKTDALSK
VLVDTGSSLNVLSKTTYTQLTYQDAPLRRSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQ
VNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEEALLVSHLSSF
SFIGADDVEGTPFQGFTIEDKNTKRNEASISSLKDAQKVIQAGGSTSWGKLIELPENKHR
EGLGFFPSTGLSTAKKGTFHSSGFIHAIIEDDPESVPRGFITPGVSSHNWVAVDVPFVAH
LSKLEIDEPVEQHNPMISPNFEFPVYEAEEEENEEIPDEISRLLEQEKKTIQPYGDELEV
INLGTKEDKKEIKVGASLGTSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKP
ECPPVKQKLRRTRPDMALKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVD
YRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWG
TFCYKVMPFGLINAGATYQRGMTTLLHDMIHKEIEVYVDDMIVKSITEEDHVKYLQKMFQ
RLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLG
RLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRP
LIIYLTVLRKFHGLCARTTR
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atggattaccttgagcaggaaaatcgggtacttcgtgaagaaatgacagtcatgcagact
aggatggacgagatggctgaattaataaaaacaatggcagaaactcagactcaagctcaa
gcacagattcaagcacaagcgcaagcattggcacaagcgcaaactcaagctcaggccgta
acagaagcgcaggcccgatcacaagcacctccacctcctcctcctgtcagaactcaggcc
gaggcatcttcttcttggacactatgtgctgacactccaacgcggtccgctccgcaacgt
tccgcgccttggtttccacctttcactgctggggagatatttcgtcctatcacttgtgaa
gctcagatgcccactcaccagtacacggctcaagtacccctacctgccatgagggtcact
ccagccaccatgacctactcagcacctgtgatacatacaattccgcaaactgaagaacct
atctttcattcagggaatgtagaggcttacgaggaagtaagcgacctacaagaaaagtat
gatgaactacgccgagacatgaaagccctccgtgataaagggaaatttgggaagactgcg
tacgatctctgtttggtaccgagtgtgcaggtgcctcacaaattcaagatcccagatttc
gagaaatacaaaggaagttcttgtcctgaggaacatctaaaaatgtatgtgagaaggatg
cctgcgtatgcccaagatgatcagattcttatttactatttccaagaaagcttgaccggc
cctgcttcaaagtggtacacaaacctagacaaaacaagggttcaaactttccgtgacctt
tgtgaagcttttgtggaacagtacagttacaatgtagacatgactccggaccgaagtgat
ctccaagccatgactcagggagataaagagacgttcaaagagtacgcccaacggtggaga
gacaccgctgcccaagtcagcccacgaattgaggagaaagagatgaccaagctcttccta
aaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgca
gagatggttggtatgggagtacagttagaagaaggagtccgagaaggacgcttagtaaag
aatgcaactcctgccaatgggaccaagaagaccgggaatcatttcccgaggaagaaagag
caagaagtcggtatggtgactcatggaatgcctcaacaaacttatccagcctatcaacac
attgctgccatcacacccacctctcacccttttcaacaaacaaataaccattctcaaata
ccgcaatatcctcaaataccgcaatatcctcaaataccacaatatcctcaattcccacaa
aatccttcaccacaaaatactcaacaacaaaatttccaacaacaaccataccaacaattc
ccataccaacaataccctcaacaaaatttccaacaacaaccttatcaacaacgcccacaa
caaccgcgaccaccaagaatgccgattaacccaataccagtcacctatgcagaattactt
cccggcttactcaagaaaaaccttgtccaaactagaacagctcctcctatcccagaaaaa
ctaccatcttggtatagacttgaccaaacttgtgacttccatgaagggggccgtggccat
aacattgaaacttgttatgcctttaaaagcacagtgcagaggttgatcaatgatggaaaa
ataactttcacagactcggcgccaaatgttcaaacaaacccattgccgaatcacggtgcc
gcaacagtcaacatgatcgaagattgtcaaaagactcgtcccattctgaatgttcaacat
attagaacacccttggtcccgttacatgccaagttatgcaaagtcgacctttttgagcat
gatcatgatctctgtgaaatatgccttatgaactccggaggatgtcagaaagtaaggaat
gatattcaagggcttctaaaccgaggagagcttgtggtcgaaaggaggtgtgatgatgtg
tgtgtaataactcctgaggggcctttggaggtattttatgacagtcgaaagtcaactatc
acccctctggtgatttgcttaccgggtccactgccatatgcttctgaaaaagccattcca
tacaaatacaatgccaccatgattgaagagggtcgtgaggttccaataccgcctttgtct
agtgtggataatattgttgaagacagtagagttctgagaaatgggcgcgttgttcccata
gtgttcccaaagaagattgatgctacaataaacaaggaggttcggactaaagatgctggt
atcgccaaagaagtggatcaacccaatggggctggtacaagtgcagagtttgatgagatt
ctcaagttaataaagaagagcgagtacaaggttgttgaccaactgatgcagactccatcc
aaaatatccataatgtctttattactaaattctgaggcccataaagatgcattaatgaag
gtcttagaacaagcttttgtggattatgatgtaacggtgggtcagtttggcggaatagta
gggaacatcactgcatgcaacaacttgagtttcagtgatgaagagctcccagcagaagga
aggaaccataatcgggcgctgcatatatctgtgaactgtaaaaccgatgctttgtcaaaa
gtgctggtggatactggatcatctttgaatgtgttgtccaaaacaacttatacccaactc
acataccaagacgcacctttgagacgaagtggggtaatggtgaaagcttttgatggctcg
aggaaggatgtccttggagaggtggttctacccatcacagttgggccacaagttttccaa
gttaattttcaagtcatggacattcaagcttcgtatagttgcctactgggtcgaccctgg
attcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtaaagaat
gggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatccttc
tctttcattggggcagacgatgtcgaagggacaccttttcaagggtttactatagaagat
aagaataccaagaggaatgaagcctctatctcgtctctgaaagatgctcagaaggtcata
caagcaggagggtccacaagctggggaaagctgatagagcttccagaaaacaagcaccga
gaaggtttgggtttcttcccatctactggtttgtccacagccaagaagggcactttccac
agttcgggctttatccatgcaatcattgaagatgatcctgaaagtgtgccacgaggtttt
ataacgccaggagtatccagccacaattgggttgctgtagatgttccttttgttgctcac
ttgtccaaattagaaatcgacgaacccgttgaacaacataaccctatgatctctcccaac
tttgagttccctgtgtatgaggcggaggaagaagagaatgaagagatccctgacgaaatc
tctcgactactcgaacaagaaaagaagaccattcagccttatggggacgaactagaagtg
attaacttgggcaccaaagaagacaagaaagaaatcaaggttggggcatcgctcggaaca
agtgttaaaaagcaagtgatagagctcctcaaagaatatgttgatgtgtttgcctggtcc
taccaagatatgccgggtctagacactgatattgtggtacatcacctacctttgaaacct
gagtgtccgccggtcaaacaaaagttgagaagaacacgtcctgacatggctctcaaaatc
aaagaagaggtacagaaacagatcgacgctggtttcctcatcacatcaaattacccccag
tggttagctaacatagtgcctgttccaaagaaagatggtaaggtcagaatgtgtgttgac
taccgtgatttaaacaaagctagcccgaaagacgacttccctttacctcatattgacgtg
ttggtcgacagtactgcaaagtctaaagtcttctcattcatggatggattctccggttat
aatcaaatcaagatggcacccgaagatagagagaaaacatcatttattacaccttggggc
actttctgttacaaagtaatgccgttcggtttaatcaatgccggagctacttatcagagg
ggtatgactactcttctccacgatatgatacataaagagattgaagtctatgtggatgat
atgatagtcaagtcgattactgaagaagaccatgtcaagtatctacagaagatgttccag
cgcctaaggaagtacaaacttcgtctaaatcccaacaaatgcacttttggtgtcagatcc
ggaaagcttctaggtttcattgtcagccagaaaggcatcgaagtagatcctgacaaagtc
aaagccatcagagagatgcctgctccgagaacagaaaaagaagtaaggggttttcttgga
cgactaaattacatctcccggttcatttctcatatgactgcaacttgtgggccgatattc
aaactactccgcaaagaacaaggtattgtgtggaccgaagattgccagaaggcttttgac
agcataaagaagtacttgctagaaccaccgattctcatccctccagttgaaggaagacct
ttgatcatatacctaacggtgctaagaaaattccatgggttgtgtgctcggacaacaaga
tga
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