Medicago truncatula (barrel medic): 25484578
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Entry
25484578 CDS
T01716
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X2
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
25484578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25484578
03036 Chromosome and associated proteins [BR:
mtr03036
]
25484578
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
25484578
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
25484578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
25484578
NCBI-ProteinID:
XP_013468880
UniProt:
A0A072VM89
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Position
1:complement(38767214..38774885)
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AA seq
1004 aa
AA seq
DB search
MFGSTNPFGQSSSPFGSSQSVFGQQNNTNNNPFAPKPFGSPTPFGSQQTGNSVFGGTSTG
VFGTAQTSSPFSSNTFGASSSPAFGTSMPAFGASSTPAFGSSVFGQKPAFGGFGSTPTQT
SPFGSATQPSQPAFGSNTQQSQPAFGSSIFGSSTPAFGSTGTPAFGATSTPAFGATSTPA
FGAPSTPAFGAPSTPAFGAPSTPAFGATSTPAFGSTSTSAFGNTGGAFGMSNTTVFGGGG
GFGASSSPVFGSSSTPAFGASSSPAFGASSAPGFSFGSTTPAFAQSSSAFGTSSPFGSTT
SAFVGQSSAFGSQTPTQAFGSTGIGQSGFGGQRGGSRIASYSATVEADSGTSGQTAKLES
ISAMPVYKDKSHEELRWEDYQLGDKGGPHASAPPSTGMPGFNSSTSQTNVFGQSPANPFS
SSTTPNSNPFGQKTFGTSAPAFSSPAFPSSSSSAAAPSIFGTPAPGLFGANSSSQPVGSS
TSLFGGQGTSSQFSTNIFGNTQPSLFNTSAPTNAQSGFGQNTSQFGQTGAFNQPSMFNQP
SSGSLFSSSPSLTSNAPTGFGQAAPSMSTPFQSTPSFQSTGTFSFSNYAQTQPAGASSFA
GTQTQNMFGQNNVGLQAIPQSSMVAQAAPITNPFGTLPALPQMSIGRVGTTPSVQYGISS
MPAQDKPATVRISSLLTSRHLSQRRVKFPIRKYKNEGSKVPFFSDDEDTPTTPKADALFI
PRENPRALIICPMEQWPGRTSEKASSFKDRYASVNENGISSREAGTTPNDRTRSEEKERT
GAENGVVKEQVQQPVPTKHASNGNNEDHSLQKADMYKTLSGHRAGEAAIVYEHGADVEAL
MPKLRRSDYYTLPRIHELAAKERAEPGFCSHVKDFVVGRQGYGTIRFLGVTDVRGIDLES
IVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGQQYTEGPRIGKYEEML
KRKAEDQGAEFVSYDPSKGEWKFRVNHFSVYKLVDEDSWIQADV
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgtttggttcaacaaatcctttcgggcagtcatcaagcccgttcggctcgtctcaatcc
gtgttcgggcagcagaacaacacaaataacaatccttttgcacctaagccatttgggagt
ccaactccatttggatcgcagcaaacaggtaattccgtgtttggtggtacttccaccggt
gtatttggcacagctcagacatcgtctccgttttcttccaatactttcggcgcttcatct
tctccagcttttggtacttcaatgccggcatttggggcatcttcaactccggcttttgga
tcatcagtgtttggtcagaagcctgcttttggaggttttggctctactcctactcaaaca
agtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaacacccaacag
tcgcaaccagcatttggaagcagcatatttggttcctcaacaccagcatttggttcgaca
ggaactcctgcatttggtgctacgagcacccctgcatttggtgctacgagcacccctgcg
tttggtgcacccagcacccctgcttttggtgcacccagcaccccagcttttggtgcaccc
agcaccccagcttttggggcaaccagcacccctgcatttggttcaacttcaacctcagct
tttggtaacacaggaggtgcatttggcatgtcaaatactactgtgtttggtggtgggggg
ggatttggggcttcaagcagtcctgtatttggttcatcaagcacgcctgcatttggggcc
tccagctctcctgcttttggtgcttctagtgccccaggttttagttttggttccaccact
ccggcttttgctcagtctagttctgcatttggcaccagcagcccatttgggagtacgacc
tctgcttttgtaggtcagagttctgcatttggatcacagactccaactcaagcatttgga
agtactggtattgggcagtcaggatttggaggtcaacggggtggaagtagaatagctagt
tactcagctacagtggaagcagatagtggcacctctggacagactgcaaagttggagtca
atatcagccatgcctgtttacaaagataaaagccacgaggagctaagatgggaggactat
caattgggagataaaggtggaccacatgcctctgctcctccgtcaactggtatgccaggc
tttaattcgtctacgtcacagacaaatgtatttggccaatccccagccaatcctttctct
agtagcacaacacctaattctaacccatttggacaaaagacatttggaacttcagctcct
gccttcagttcaccagcatttccttcttcatcatcatcagcagcggcaccctccattttt
ggcacacccgcacctggtctgtttggtgccaactcttcgtcacagccagttgggtcatct
acatccctgtttggtggtcaaggcacatcttcccaatttagtacaaacatttttggcaat
acccagccgagcctatttaacacttcagcacctacaaatgcacagtctggttttggtcag
aatacctcccaatttgggcaaactggtgcttttaatcaaccaagcatgttcaatcaacct
tcatctggaagccttttctcaagcagcccatcactcacatctaatgctccgacaggtttt
ggacaagcagcgccgtctatgtcaacacctttccaatctacaccttctttccaatcaact
ggtactttttcctttagcaactatgcccagacacaacctgctggtgcaagtagcttcgct
ggaactcaaactcaaaacatgtttggtcagaataatgttggacttcaggctattccccag
agttctatggttgcacaagcagcacccattacaaacccatttggaacacttcctgctttg
cctcagatgtcaattggtcgagttggaaccactccttccgttcaatatggaatctctagc
atgcctgcccaagacaaacctgctactgtaagaatatcctccttattgacttctcgccac
ctctcacaaagaagagtcaagtttcctataaggaaatataagaacgagggatcaaaggtt
ccattctttagtgacgatgaagacactccaaccacaccaaaggctgatgcccttttcatt
cctagggaaaatccaagggcgttgatcatttgtcccatggagcagtggcctggaaggact
tctgagaaagcatcctcttttaaggatagatacgcctccgtgaatgagaatgggataagc
tcaagagaagcaggtaccacacccaatgataggaccaggtcggaggaaaaagagaggact
ggagctgaaaatggtgttgtcaaggagcaagttcagcagcctgtacctacgaagcatgca
tccaatgggaataacgaagaccattctctgcaaaaggcggatatgtacaagacactcagt
gggcacagagctggtgaggctgccattgtgtatgaacatggagctgatgttgaggcacta
atgccaaagctgcgacggtctgattactacacactgcctcgtattcatgaactggcggcc
aaggaaagagctgaaccaggattctgcagtcatgtcaaggactttgtcgttggaaggcaa
gggtatggcaccatcagatttttgggtgtgacagatgtacgagggattgatcttgagtcc
attgttcagtttaacaatcgtgaggtgatcgtgtacatggatgattcgaagaaacctcct
gttggacaagggctgaataagcctgctgaggtaacactcctcaacataaaatgttttgac
aaaaaaactgggcaacagtacactgaagggccgagaattgggaaatatgaagagatgctt
aagagaaaggccgaggaccaaggtgctgagtttgtatcatatgatcccagtaaaggagaa
tggaagttcagggtcaaccacttcagcgtttacaagctggtagatgaagacagttggata
caagctgatgtataa
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