Medicago truncatula (barrel medic): 25488880
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Entry
25488880 CDS
T01716
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25488880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25488880
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
25488880
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GFIT
Motif
Pfam:
WD40
PRP4
ANAPC4_WD40
NBCH_WD40
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
25488880
NCBI-ProteinID:
XP_013459489
UniProt:
A0A072V5R5
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Position
3:15783112..15787615
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AA seq
565 aa
AA seq
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MKVEMENSTTTESSVPVSDIQDQNPLVSSQPTQPPVITPVLPPLAPIPTAPSSLVRPLAP
LPIRPPVIRPPVPQNGEVGSSDSDSDDDDGAATRINKGTGEYEISEESRLVRERQEKAMQ
DLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEK
LMKALEDEEAATSAPKDEAEDDLQYPFYTEGSKSLLDARIDIAKYSLVKAALRIQRAQRR
REDPDEDVDAEIDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSFTGATKLWS
MPNVKKVSTLKGHTQRATDVAYSPVHKNHLATASADRTAKYWNDQGALLGTFKGHLERLA
RIAFHPSGKYLGTASYDKTWRLWDVETEEELLLQEGHSRSVYGLDFHHDGSLAASCGLDA
LARVWDLRTGRSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPA
HSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLLGHEAKVTSLDVLGDGGYI
VTVSHDRTIKLWSSGTTSEHAMDVD
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtggagatggaaaattcaacaacgactgaatcgtctgtacctgtttctgatatt
caagatcaaaaccctctagtttcgtcccagccaactcaaccaccggttattactcctgtc
ttgccacctctggctccaattcctacagctccttcctctcttgtccgacctctggcaccg
ctcccaatccgcccaccggttattaggccgccggtaccgcaaaatggcgaggttgggtct
agtgattctgattcggatgatgatgatggtgcagccaccagaattaataagggtactggg
gagtatgagatatcagaagagagtagactggtgagggagcggcaggagaaagccatgcaa
gaccttatgatgaggaggcgagctgctgctcttgctgttcccaccaatgacatggcagtg
agggcccgtcttcgccatcttggtgagccgattactctctttggtgagagggagatggag
agacgagataggttgcggatgattatggcaaagctggatgcggatggtcagctggaaaag
ctaatgaaagctcttgaggatgaagaggccgcaacttctgctccaaaagatgaggctgag
gatgatctgcagtatcctttttacactgaagggtcaaagtctctccttgatgcaaggatt
gatattgcgaaatattctttagtaaaggccgcattgcgtattcaacgtgcccagagaaga
agagaggatccggatgaagatgtggatgcggagattgattggacattgaagcaggcagcg
aatttgaatcttgaattcagtgaaatcggagatgatcgaccacttactggttgctcgttc
tcccgggatggaaaagggcttgctacctgttctttcactggagctaccaagttgtggagc
atgcctaatgttaaaaaagtttctaccttgaaggggcacacccagcgtgctactgatgtt
gcttattctcctgtgcacaaaaatcatttagcaactgcctctgctgaccggacagcaaag
tattggaatgatcaaggagctcttttgggaacatttaagggtcatcttgaacgtcttgca
cgcattgccttccatccatcagggaagtacttgggcactgctagctacgacaagacatgg
aggttatgggatgttgaaacagaagaggagttgcttcttcaagaaggccatagtagaagt
gtatatggtttggatttccatcatgatggatcgttagctgcgtcttgtggactagacgct
ctggctcgtgtatgggaccttcgaactgggagaagtgttcttgcactagaaggtcatgtc
aaatcgattcttggcatcagtttttctcccaatggatatcatttagccaccggtggtgaa
gataacacttgtcgtatttgggacttgaggaagaagaagtctttgtacaccattcccgcg
cactctaatctaatatcacaggtcaaatttgagccacaggagggttactttttggtaact
gcctcatatgacatgacggccaaggtttggtcaggccgggactttaagcctgtgaagaca
ctattgggacatgaagctaaagttacttctctggatgttcttggagatggtgggtatatt
gttaccgtctcccatgatcgcaccataaagctgtggtccagcggcactactagtgagcat
gctatggatgttgactaa
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