Medicago truncatula (barrel medic): 25489148
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Entry
25489148 CDS
T01716
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS54
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
mtr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
25489148
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
25489148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
25489148
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
25489148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
25489148
NCBI-ProteinID:
XP_013460048
UniProt:
A0A072UW74
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All DBs
Position
3:complement(26881293..26885525)
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AA seq
658 aa
AA seq
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MDEDGEHGGDQFYRNEAISAVADDGFMAEEDEDYEDLYNDVNVGEGFRQSLQKTELSEVK
IEAVEEKKLPPPPPLPLPPPPPPLTAHGVGGVSAFQNQELIGNEVGVQGGGIRVELGQKA
ATLSGIGEQGGNTGVELQGIIGQQQQPPLGVGGFVGGVGNDGLMRQGQGGGVGGGSGGAG
GGGGSTVLFVGDLHWWTTDADLEAELCKYGQVKDVRFFDEKASGKSKGYCQVEFYDPLAT
TACKEGMNGHLFNGRPCVVSYANPYTVKKMGEALNNRNQPMNPTAGANQGRRGPAEVGGV
KPGGGNVGTGGNYQGGDGNNNNNNNSNNNNNRGSGRGNWGRGNNPGMGNRGHGNPMRNRG
GGMGGRGMIGNAGNGYGPGIGAGPPMMHPGFDPSFGGPIGRVGGYAGYPGGPTPPFSGMM
PSYPGMHGVAPHVNPGFFGRGMHMNAIGMIPPSGMDGPNMGMWPDPNMGGWGGDELGGGK
VAESSYGEEAASDHQYGEVNPDRAGWQNTMREKDRGSERDWSGSSERRYRDDRDQGYERD
VPREKDAGHDPEWPERKHRDDREVVRERSRDRDRGREKSRDRERERGDRDRERDRYREDR
DRYADHHRYRDREPEHDEEWERGRSSRTHSKSRLSQDEEHHSRSKDADYGKRRRLTSE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagacggagagcacggtggcgatcaattctatcgcaacgaagctatatctgcc
gtcgccgacgatggtttcatggccgaagaagatgaagattacgaggatctttacaacgat
gttaatgttggtgagggttttcgtcaatctttgcaaaaaaccgagctttcagaagttaaa
attgaggccgttgaagaaaagaagcttcctccaccaccaccgttgccactgccgccgcca
ccaccaccgctgacagctcacggtgtaggtggggtttctgcgtttcagaatcaagagctt
atagggaatgaagtgggtgttcaaggaggtgggattagggttgaattagggcaaaaagct
gctaccttgagtgggattggggaacagggtggtaatactggggttgagttgcaggggatt
attgggcaacaacagcaaccaccacttggtgttggtggttttgttgggggtgttggaaat
gatgggttgatgagacaaggtcaaggtgggggtgttggtggaggaagtgggggtgcagga
ggtggtggaggaagtactgtattgtttgtgggtgatttgcattggtggactactgatgct
gatttggaagctgagctttgtaagtatggacaagtgaaggatgtgaggtttttcgacgag
aaagctagtgggaaatcgaaagggtactgtcaggttgagttctatgatcctttagctaca
actgcttgtaaggaagggatgaatggtcatttgttcaatggcaggccgtgtgttgtatct
tatgcgaatccttatactgttaagaaaatgggagaggctttgaataataggaatcaaccg
atgaacccaactgccggggcgaaccagggaaggagaggacctgcggaggttggaggggtt
aagccgggtggtggtaacgttgggacaggtggtaactaccaaggtggagatgggaataat
aataataataataatagtaataataataataatagaggtagtggaagaggcaattggggg
agagggaacaatcctgggatggggaacagaggacatggtaatccgatgaggaatcggggt
ggtgggatgggtggtagaggtatgattggtaatgctggaaatggatatggacctggtatt
ggtgctggcccgcctatgatgcatccgggttttgatccttcatttggtggtcccattggt
cgagtgggtggctatgcaggctatcccggtggcccgacacctccgttctctggtatgatg
ccttcataccctggcatgcatggagtagcacctcatgttaatcctggcttttttggaaga
gggatgcatatgaatgctatagggatgatcccaccatcaggcatggatggtcctaatatg
ggaatgtggccggatccaaatatgggtggatggggtggtgatgaactcggtggtggcaag
gttgcagagtcaagttatggggaggaagccgcatccgaccatcagtatggtgaggtgaat
cctgatagagctgggtggcagaatactatgagggaaaaagatagaggatccgaaagggac
tggtccggttcttctgagcgaaggtacagggatgatagagatcaagggtatgagagagat
gtacctagagaaaaagatgctggacatgatcctgaatggccagaaagaaagcaccgtgat
gatagagaggtggttcgtgaacgatctcgtgaccgtgaccgtggtcgggaaaagtctcga
gatcgcgagcgcgaaaggggggatcgagatcgtgagcgggacagatacagggaagatagg
gacagatatgctgatcatcataggtacagagaccgtgaaccagagcacgatgaggagtgg
gaacgggggagatcgtctagaactcacagtaaatcaagattatcacaggatgaggaacac
cattctaggtcaaaagatgctgattatggaaagaggaggcgactgacctctgagtaa
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