Medicago truncatula (barrel medic): 25492356
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Entry
25492356 CDS
T01716
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mtr04131
]
25492356
Membrane trafficking [BR:
mtr04131
]
Protein recycling
Others
EARP complex
25492356
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Sec8_N
TetR_C_30
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
25492356
NCBI-ProteinID:
XP_013455908
UniProt:
A0A072UJM4
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All DBs
Position
4:28806994..28824884
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AA seq
1121 aa
AA seq
DB search
MQPNLFPFGSALSNNPFILNEGGGGGEGGIDSSRVLVLLPFFLLSQGGAMDLSKVGEKIF
SSVKSARSLGLLPSLPDRPEVPARAVAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSR
SNDPVVEELEDEFYEEDFDPIRHVLEHVPSEENELTYFEKQATLRITQLDKVAEHLSRHV
MEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSLNEVSRDLIVNSYSKKKQALVD
MLPVLTELRRALDMQSTLEFLVEEGNYWKAFQVLSEYLQLLESFPELSAMQEMSHGVEVW
LGRTLQKLDALLLDVCQEFKEDDYLTVIDAYALIGDTSGLAEKIQSFFMQEVISETHSVL
KTIVHEDEEGLAQNSRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLERK
DSVPQTSDKCNEDSSCSLGEAREVDSVATACNNSMSSSGDVIHDSSSTISAPTEITGSPP
YSDFHDPVDEAREEESSASSIDSPWYHLRKEATTFVSQTLQRGRKNLWHLTASRVSVLLS
SAAACSASIHLFLKNYEDLSVFILTGEAFCGIEVVEFRQKLKVVCENYFIAFHRQNVHAL
KMVLEKETWLKLPPETVQLISFAGLIGDGAPLISLSVSKSMNINAIHSNNKSVNMVHTGA
RKSGFSHWIKNGNPFLPKLSTSKEGHGIPQPNGSSYGEFDGGSVNNYHDDRVSTRKNDSS
PLNGANSVSEDENEDLLADFIDEDSQLPSRSSKPHHSRSNSSHGNDEESTAQTGSSLCLL
RSMDKYARLMQKLEVVNVEFFKGICQLFEIFFYFIYETFGQQNTNSSGKSSVNSLNYRLR
TALSRINQECEEWLKPPHSSSPTSSSSFVHAELTPTSPPNMNFGHPSGTAFSLKERCVAV
DTISLVARILNRSKAHLQSMLLQSNSTVLEDFYVHLVDAVPDLTEHVHHTTVRLLLHING
YVDRVANCKWEVKELGMEHNGYVDLLLGEFKHFKTRLAHGGIRKETQDTLLDYGLDIVAE
TLVEGLSRVKRCNDEGRALMSLDLQVLINGLKHFASLNVKSKLQMVETFIKAYYLPETEY
VHWARGHPEYSKSQVVGLVNLVASMKGWKRKTRLEVLEKIE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgaatttatttccattcggaagcgcgttgagtaataatccgtttatattgaac
gaaggaggaggaggaggagaaggtggaatcgatagttctagggttttggttttgcttcct
ttcttcttgctctctcaaggaggagcaatggatttgtccaaagttggtgaaaagattttc
agttctgttaagtctgctagatcgcttggtttacttccttctcttcctgatcgccccgag
gttccagctcgagctgttgctgcagctgctgtagctcgtgctcttgcagggttacctcct
catcagaggtatagtctttcatcaagttcagaagagctgagttcaatatatggaagcaga
tctaatgaccctgtagtggaggaactggaggatgaattctatgaggaggattttgatcca
attaggcatgttttggagcacgttccttctgaagaaaatgagctaacatattttgaaaag
caggctacccttagaataacacaactggacaaagtagcagagcatttatctcgccatgtt
atggagcatcatgaagtaatggtgaaggggatgaatttggtcagggaattggagaaagac
ttaagaattgcaaatgtcatctgtatgaatggaagaaggcacctgacatcttctttgaat
gaagtttcaagggatttgattgtgaattcttattcaaaaaagaagcaagcactagtggat
atgcttccagtcttgactgaacttcgacgtgcactagacatgcagtcaacacttgaattc
cttgtagaggaagggaattattggaaggcatttcaagtcctatcggagtatttgcaactc
ttagagagtttcccagagctttcggcaatgcaagagatgagccatggtgtggaggtttgg
ctgggaagaactttgcagaaattggatgctcttttattggatgtatgtcaggaatttaag
gaagatgactatctgaccgtaattgatgcgtatgcattgataggggataccagtggtctt
gctgaaaagatacaaagtttcttcatgcaagaagtcatatcagagacacattcggtgcta
aagactattgtgcatgaggatgaggagggactagcgcaaaatagtaggctcacttacagc
gacctatgccttcagatacctgattctaagtttaggcagtgcttactaagaacattggct
gttctatttgaccttatgtgttcataccatgaaattatggattttcagctagagagaaag
gattcagtaccacaaacatctgataagtgcaatgaagacagttcatgtagtttaggcgag
gctcgggaagttgattcggttgcaacagcctgcaacaattctatgtccagttccggggat
gtgatacatgactcatcttcaactatcagcgcaccgaccgaaattactggttcaccacca
tacagtgattttcatgatccagtggatgaggctagagaggaggaaagttcagcctcaagc
atcgattccccatggtaccatcttcggaaagaagctacaacatttgtttctcagaccctt
caaagaggacgcaagaatctgtggcatcttactgcaagtcgtgtctcagtgttgctttct
tctgctgcagcttgttctgctagcattcatctattcttgaaaaattatgaagatctgagt
gtattcattttgactggtgaagccttctgtggaattgaagtggttgaattcaggcaaaag
ttgaaggttgtttgtgaaaactatttcatagcatttcatcgacaaaatgtgcatgcacta
aaaatggttttggagaaggaaacttggttaaaattacctccagagactgttcaacttatc
agttttgctggacttattggtgatggagcaccattgatttctttatctgttagtaaatca
atgaatatcaatgcaatccattccaataataaatcagtgaacatggttcacactggtgcg
aggaagagtgggttctctcattggattaaaaatggaaatccttttctgccaaaattatca
acctcaaaagaaggtcatggtattccccaacctaatgggtcaagttatggtgaatttgat
ggaggctcagtcaacaactatcatgatgatagagtctccactagaaagaatgactccagt
ccattgaatggtgccaattctgtttcagaagatgaaaatgaagatcttcttgctgacttt
attgatgaagacagtcaacttccaagtcgaagttctaaaccccatcattcaagatctaac
tcttcacatggtaatgatgaagagagtacagcacaaactggatcgtcactatgtctttta
aggtctatggacaaatatgcaaggcttatgcagaaattagaagtagtaaatgttgagttc
tttaagggaatatgccagttgtttgaaatttttttctattttatatatgaaacatttggt
cagcagaatactaattcaagtggaaaaagctcagttaactctcttaattatcgcttgagg
acagccttatctagaataaaccaagagtgtgaggagtggcttaagccgccccactcatct
tcaccaacatcaagttcatcatttgtacatgcagagttgacacctacaagtcctccaaat
atgaattttggtcacccctcggggactgcttttagtctcaaggaaagatgtgtggctgtt
gacactatatctctcgttgctcgaatactaaatagatccaaagctcacctccaatcaatg
ctcttgcaaagtaattcaactgtacttgaggatttctatgttcatctggtggatgctgta
ccagatcttacagagcatgtccatcacacaacagtaagactactgctgcacattaatggg
tatgttgatcgtgttgccaattgtaaatgggaagtaaaagaacttggaatggagcataat
gggtatgttgatttgctgctgggggagtttaagcactttaaaacacgactcgctcatgga
ggaattcgtaaggagactcaagacacattgttggattatgggcttgacattgtcgcggaa
actcttgtggaaggactttcacgggtgaagagatgtaacgatgaaggacgggctctaatg
tcattggatctgcaggttttgataaatgggctaaagcattttgcttcgttgaatgtgaag
tccaagctacaaatggttgaaactttcattaaggcttactaccttccggagacagaatat
gtgcactgggcacgtgggcacccggaatacagtaaaagccaggttgtgggattggtcaac
cttgttgcctctatgaaaggttggaagaggaaaaccaggttggaagtactggaaaagatt
gagtga
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