Medicago truncatula (barrel medic): 25493727
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Entry
25493727 CDS
T01716
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
25493727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
25493727
03009 Ribosome biogenesis [BR:
mtr03009
]
25493727
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
25493727
Spliceosome [BR:
mtr03041
]
Complex A
U1 snRNP components
U1 related factors
25493727
Complex B
25493727
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
25493727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
25493727
NCBI-ProteinID:
XP_013457762
UniProt:
A0A072URV4
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All DBs
Position
4:51513622..51518465
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AA seq
625 aa
AA seq
DB search
MNPYDNRYSDSTSFRGRRSDLVGPMPPQNFGRGGPAPYGAAPYASHAPTGFGSAPVTPIP
HFLPPPGGGGFSIGRGGGGGFGPRFGNGHASDRKYDSGRGGRGGGRGGAQGFSGGRGRGG
GGGRGGSGGRGGGFGGRHGSSKDDLNNITLPKQDFRNLVPFQKNFYVESPMIQAMSDQQV
MQYRASRDITVEGHDVPKPIRAFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGRD
LIGIAETGSGKTLSYLLPAIVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQQEAMKFGSR
SNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRM
LDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVESLARQFLHNPYKVVIGSPYLKANQSI
NQVVEVVTDMEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK
NQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRA
GAKGTAYSFFTSANAKYARDLIKILQDAGQIVSPALSALTRSGGFGQHASRGGFRSRGRG
GYGNRGSTSGSNAIPVGGKRPWQSR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacaataggtactccgattccacttcttttcgcggccgtcgcagtgat
ctcgttggacctatgccgccgcagaatttcggccgcggcggccctgctccgtacggtgct
gctccatatgcatctcatgcaccgactggttttggatccgctccggttaccccgattcct
cactttttaccacctcctggaggaggtggatttagcataggtcgcggcggcggtggtggt
tttggccctagattcggcaacggtcacgcaagtgatagaaagtatgattcggggcgtggt
gggagaggcggtggtaggggtggagctcaaggttttagtggtgggagaggtcgtggaggt
ggtggtggtagaggagggagtggaggaagaggtggtggatttggaggtagacatggatct
tctaaggatgatttgaacaacattacacttccaaagcaagattttagaaatttggttcct
tttcagaaaaatttctatgttgaaagtcctatgatacaagccatgtctgatcagcaagtc
atgcagtaccgtgctagtagagatattacagttgaagggcatgatgtgccaaaaccaatt
cgcgcttttcatgaggcgaattttcctgattactgccttgacgttattgccaagttgggt
tttgttgagcctactccaattcaggctcagggttggcccatggctcttacgggtagagat
ttaattggcattgctgagactggctcgggtaaaactttgtcgtatctacttcctgctata
gttcatgtcagtgcacaacctcgattagtacaaggggaaggtcctgttgtcctggtttta
gcaccaactagagagttagctgttcaaattcaacaagaagctatgaaatttgggtcacga
tcaaatattagatgtacatgcatatatggtggtgctccaaagggccctcaaattcgtgac
cttagaatgggtgttgagattgttattgctacacctggtcgtctaatagatatgttggaa
gctcagcacacaaacctgcagagagtgacgtaccttgtcttggatgaagctgatcgaatg
ttggacatgggttttgaacctcagattcggaagattgtaaaccagattcgaccagatagg
cagacattatactggagtgcaacatggccaaaggaggttgaatctctggcaaggcagttt
ctgcacaacccatataaggtagttattgggtcaccatatctgaaagcgaatcaatctata
aatcaagttgttgaagttgtcaccgacatggagaaatataacagactgatcaagctgctg
aaagaagtgatggatgggagccgaattctaatatttacagaaacaaaaaagggatgtgac
caagttactagacaattgagaatggatggatggccagcattatccatccatggtgataag
aaccaggctgaaagggattgggttttggccgaatttaagagtggcagaagtccaataatg
actgccactgatgttgctgcacggggtcttgatgtgaaggacataaaatgtgtggtcaat
tatgattttccttcaagcctcgaagattatgtccatagaattggtcgaactggccgtgca
ggagctaaaggaactgcatatagtttttttaccagtgctaatgcgaagtatgctagggat
ttgattaagatcttacaagatgctggtcagattgttagtcctgcattgtctgcattgact
cggtctggtggttttggtcaacatgcatcaaggggaggctttcgctcaagaggacgagga
ggctatggcaatcggggttcaacatcaggatccaatgccattcctgtaggcgggaagagg
ccatggcagtctaggtag
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