Medicago truncatula (barrel medic): 25493890
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Entry
25493890 CDS
T01716
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03030
DNA replication
mtr03420
Nucleotide excision repair
mtr03430
Mismatch repair
mtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
25493890
03420 Nucleotide excision repair
25493890
03430 Mismatch repair
25493890
03440 Homologous recombination
25493890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mtr03000
]
25493890
03032 DNA replication proteins [BR:
mtr03032
]
25493890
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25493890
Transcription factors [BR:
mtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
25493890
DNA replication proteins [BR:
mtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
25493890
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
25493890
MMR (mismatch excision repair)
25493890
DSBR (double strand breaks repair)
HR (homologous recombination)
25493890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
25493890
NCBI-ProteinID:
XP_013457996
UniProt:
A0A072UQS0
LinkDB
All DBs
Position
4:53583863..53587333
Genome browser
AA seq
618 aa
AA seq
DB search
MAKSVSPNAISTLLSNPSPDSSSDLPDIVVQVLDLKSSGNRYSFSASDGKKKLKGIIPSN
QYSEVLSGKIQNLGLIRILDYTLNVIPNKSEKYLMLIKCEPVSPALETEIKSEQSGITLK
PKEDDVVKREGSTAGIVLKPKLDMVSKSAAQILHEQHANSAPARLAMTRRVRPLVSLNPY
MGGWTIKVSVTSKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFAMG
KVYYISKGSLKVANKNFKTVVNDYEMTLNENSEVEEVANEAAFVPETKFNFVPIDQLGPY
VNKSELVDLVGVVKNVSSTMSIRRKSNNETVPKRDITIADETKKTVVVSLWGDLATNIGQ
ELLDMADKSPVVAIKSLKVGDFQGISLSAISRSLVLVNPEVPEAQKLRCWYDSEGKDAAM
AAISSGSISSSNSGSRSVYSDRVPLSYITSNLSLGAEKPAFFSIRGNISFIKADQAMWYR
ACKTCNKKVTEDMDAGYWCESCQKNDAECNFRYIMVAKVSDASGEAFVSTFNEEAEKIIG
CPAEELDNLKSQDGEENPYDMKLKKATWIPHLLRVSVSQNEYNGEKRQRITARAVVPIDF
AAESKFLLEDISKMVASH
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatccgtttccccaaacgccatctccaccctgctctcaaatccatctcctgat
tcttcatcagatctccctgacatcgttgttcaagttcttgatctcaaaagttccggcaac
agatactcgttttctgccagtgatggaaaaaagaaactaaaagggattattccttcaaat
cagtactcagaagttctatctgggaagattcagaaccttggtttaattcgaatccttgat
tacactctcaacgttattcccaacaaatccgagaagtatcttatgttgatcaagtgtgaa
ccagtttctcctgctcttgaaacggagatcaagagtgaacaatctggcatcaccttgaag
ccgaaggaagatgatgtagtcaagcgtgaaggttctactgctgggattgttttgaagccg
aagctggacatggtttcaaaatctgctgctcagatcttgcacgagcaacatgcaaattct
gctcctgcgagattggccatgacccgtagagtgcgtcctcttgtttcactgaatccttat
atgggtggttggacaattaaggtcagtgtcacaagcaaaggaactatgcgtacctataag
aatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatggtactcag
attcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatggga
aaggtgtattacatttcaaagggatctttgaaagttgctaacaaaaatttcaaaactgtg
gtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaa
gctgcttttgttccagagactaaattcaattttgtcccaattgatcagttgggtccttat
gtgaataagtctgagcttgttgatttagttggagttgttaagaatgtgtcttcaaccatg
agcatccgtagaaagagcaacaatgagactgttccaaagcgtgacattactattgccgat
gaaaccaagaagacagttgttgtgtctttgtggggtgatcttgcaactaacataggacaa
gagttacttgacatggctgataaatctccagtagttgcaatcaaatccctcaaggttggg
gattttcaaggtatttctttgtcagctataagcagaagtttagttctggtcaatccagaa
gtacctgaagctcagaagctcagatgctggtatgattctgaaggtaaggatgctgcaatg
gctgctataagctctggttcaatttcatcatctaacagtggaagtagatcagtttactct
gaccgtgttccactctcttacataacctctaacctctccttgggggctgagaagcctgca
ttctttagcatcagagggaatatcagtttcataaaggcagaccaggcaatgtggtatcgt
gcctgtaagacttgtaacaagaaagttactgaagacatggatgctgggtactggtgtgaa
agttgccagaaaaatgatgcagagtgcaacttcagatatattatggttgcaaaagtttct
gatgcaagtggtgaggctttcgtttctaccttcaatgaggaagctgagaagatcattggg
tgccctgctgaggagctagacaaccttaaatcacaggatggagaagagaatccttatgac
atgaaattgaagaaagctacatggattccacacctcttgcgggtcagtgtttctcagaat
gagtataatggtgagaagaggcaaaggataacagcacgggccgttgttcctattgacttt
gctgctgagtctaaattcctccttgaagacatatcaaagatggtagcctctcattaa
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