Medicago truncatula (barrel medic): 25494460
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Entry
25494460 CDS
T01716
Name
(RefSeq) histone deacetylase 19
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03082
ATP-dependent chromatin remodeling
mtr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
25494460
03083 Polycomb repressive complex
25494460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mtr03036
]
25494460
Enzymes [BR:
mtr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
25494460
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
25494460
HDAC complexes
Sin3A-HDAC complex
25494460
BRAF-HDAC complex
25494460
REST complex
25494460
SHIP complex
25494460
MiDAC complex
25494460
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
25494460
Heterochromatin formation proteins
Other heterochromatin formation proteins
25494460
Chromatin remodeling factors
NuRD complex
25494460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
25494460
NCBI-ProteinID:
XP_013453272
UniProt:
A0A072UCY2
LinkDB
All DBs
Position
5:complement(57917..64643)
Genome browser
AA seq
500 aa
AA seq
DB search
MMMESVSGGNSLPSGSDGVKRKISYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLL
QHMQVVKPTAAKDRDLCKFHADDYVAFLRGITPETQQDQIRQLKRFNVGEDCPVFDGLYS
FCQTYAGGSVGGALKLNHGICDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKIHE
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPL
DDGIDDESYHSLFKPLMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIELDDKMPQHEYYEYFGPDYALHVAPS
NMENKNSRPLLDDIRAKLLENLSRLQHAPSVPFQERPPNTELQERDEDEEDDRDERWDRD
FDMDVDSNSLARRVKSEYAEAEHKDVESYHNHLDSRRDIATPFKEIACSKVTGSGVDSMA
VDGPFIKEEQENLIDDHKSR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggaaagtgttagtggagggaactcgcttccatcagggtcagatggtgtgaag
agaaagatttcatatttctatgatccagaggttggaaactattattatgggcagggccac
ccgatgaaaccacataggattcgaatgacacacgctcttttagcccactatgggttgctt
caacacatgcaggtcgtgaaacctactgccgctaaagacagggacctctgcaagttccat
gctgatgactatgtggcttttttgaggggcatcacccctgaaacacagcaagatcagatt
agacagttgaagaggtttaatgttggtgaagactgtcctgtgtttgatggtctttactct
ttttgtcagacatatgcagggggttctgttggcggtgctcttaaattgaaccatggaata
tgtgatattgcaataaattggtctggtggactacatcacgcaaaaaagtgcgaggcttct
gggttttgctatgtaaatgacattgtgctggctattttggaacttctcaagatacacgag
cgtgttctatatgtggacattgatatccaccatggtgatggtgtagaggaggccttttac
acaactgatagggtcatgactgtttcatttcataagtttggggattactttcctggaaca
ggagatgttcgtgatattggatatggtaaaggaaaatattattcactgaatgttcccttg
gatgatggaattgatgatgagagctaccattcattgtttaagccattaatgggaaaggtg
atggaggtttttagacctggtgctgtggtattgcaatgtggtgctgactctttatctgga
gataggttaggttgtttcaatctttcgatcaaaggtcatgcagagtgtgtcaaatatatg
agatccttcaatgttcctcttctgttgctcggtggaggtggctatacaataagaaatgtg
gcacggtgttggtgttatgagacaggagttgctctcgggattgaactagatgataagatg
cctcaacatgagtactatgaatattttggtcctgactatgctcttcacgttgctcctagt
aacatggaaaacaagaactcccgccctttattggatgatataagagcaaaacttcttgag
aatttatctaggcttcaacatgcgccaagtgttccattccaagagagacctccaaatact
gagcttcaagagagagatgaagacgaagaagatgatagagatgaaagatgggatcgtgat
tttgatatggatgttgatagcaattctcttgcacgaagggtgaaaagtgaatatgctgaa
gctgagcataaagacgtggaaagctatcataatcatctagacagtagaagagatattgct
acacctttcaaggagattgcatgctccaaggtgacagggtccggggtggattcaatggct
gtggatggaccattcatcaaagaagagcaggagaacttaatcgatgatcacaagtcaaga
tga
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